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Cluster: HRGMv2_0130_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0130_7 HRGMv2_0130_7_4 2338 3666 + 2.A.1.1.106
STP HRGMv2_0130_7 HRGMv2_0130_7_5 3668 4528 + PfkB
CAZyme HRGMv2_0130_7 HRGMv2_0130_7_6 4552 6138 + GH172
TC HRGMv2_0130_7 HRGMv2_0130_7_7 6156 9092 + 1.B.14.6.1
pfam HRGMv2_0130_7 HRGMv2_0130_7_8 9104 10702 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_0130_7 HRGMv2_0130_7_9 10686 12302 + GH183
CAZyme HRGMv2_0130_7 HRGMv2_0130_7_10 12326 13849 + GH183
Gene ID: HRGMv2_0130_7_4
Type: TC
Location: 2338 - 3666 (+)
Gene ID: HRGMv2_0130_7_5
Type: STP
Location: 3668 - 4528 (+)
Gene ID: HRGMv2_0130_7_6
Type: CAZyme
Location: 4552 - 6138 (+)
Gene ID: HRGMv2_0130_7_7
Type: TC
Location: 6156 - 9092 (+)
Gene ID: HRGMv2_0130_7_8
Type: pfam
Location: 9104 - 10702 (+)
Gene ID: HRGMv2_0130_7_9
Type: CAZyme
Location: 10686 - 12302 (+)
Gene ID: HRGMv2_0130_7_10
Type: CAZyme
Location: 12326 - 13849 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0130_7_4 vegan > omnivore 1.89237 0.00864
HRGMv2_0130_7_5 vegan > omnivore 1.91659 0.00864
HRGMv2_0130_7_6 vegan > omnivore 1.91204 0.00864
HRGMv2_0130_7_7 vegan > omnivore 1.94548 0.00864
HRGMv2_0130_7_8 vegan > omnivore 2.13673 0.00864
HRGMv2_0130_7_9 vegan > omnivore 1.73193 0.00864
HRGMv2_0130_7_10 vegan > omnivore 2.00350 0.00864

🧭 Explore Read Mapping of CGC

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