dbCAN Logo

Cluster: HRGMv2_0128_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0128_1 HRGMv2_0128_1_99 106940 108469 + 1.B.9.4.2
pfam HRGMv2_0128_1 HRGMv2_0128_1_100 108729 109328 + RuvA_N | RuvA_C | HHH_5
TC HRGMv2_0128_1 HRGMv2_0128_1_101 109340 116803 + 9.A.25.1.1
pfam HRGMv2_0128_1 HRGMv2_0128_1_102 117485 117712 + TatA_B_E
TC HRGMv2_0128_1 HRGMv2_0128_1_103 117748 118548 + 2.A.64.1.3
pfam HRGMv2_0128_1 HRGMv2_0128_1_104 118606 119679 + GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
CAZyme HRGMv2_0128_1 HRGMv2_0128_1_105 119767 121239 + GH109
Gene ID: HRGMv2_0128_1_99
Type: TC
Location: 106940 - 108469 (+)
Gene ID: HRGMv2_0128_1_100
Type: pfam
Location: 108729 - 109328 (+)
Gene ID: HRGMv2_0128_1_101
Type: TC
Location: 109340 - 116803 (+)
Gene ID: HRGMv2_0128_1_102
Type: pfam
Location: 117485 - 117712 (+)
Gene ID: HRGMv2_0128_1_103
Type: TC
Location: 117748 - 118548 (+)
Gene ID: HRGMv2_0128_1_104
Type: pfam
Location: 118606 - 119679 (+)
Gene ID: HRGMv2_0128_1_105
Type: CAZyme
Location: 119767 - 121239 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0128_1_105 vegan > omnivore 1.55918 0.00181

🧭 Explore Read Mapping of CGC

← Back to Cluster List