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Cluster: HRGMv2_0128_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0128_9 HRGMv2_0128_9_7 8165 9619 - 2.A.38.1.1
STP HRGMv2_0128_9 HRGMv2_0128_9_8 9695 11038 - TrkA_C
pfam HRGMv2_0128_9 HRGMv2_0128_9_9 11035 13011 - TPP_enzyme_C | Transket_pyr | Transketolase_C | DXP_synthase_N
CAZyme HRGMv2_0128_9 HRGMv2_0128_9_10 13419 17564 - CBM32 | GH2
NULL(UNKNOWN) HRGMv2_0128_9 HRGMv2_0128_9_11 17931 22535 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0128_9 HRGMv2_0128_9_12 23183 25846 + GH5_13
pfam HRGMv2_0128_9 HRGMv2_0128_9_13 26291 28045 + Big_2 | BACON
TC HRGMv2_0128_9 HRGMv2_0128_9_14 28172 29314 + 3.A.1.13.2
TC HRGMv2_0128_9 HRGMv2_0128_9_15 29376 30416 + 3.A.1.13.2
TC HRGMv2_0128_9 HRGMv2_0128_9_16 30788 32341 + 3.B.1.1.2
Gene ID: HRGMv2_0128_9_7
Type: TC
Location: 8165 - 9619 (-)
Gene ID: HRGMv2_0128_9_8
Type: STP
Location: 9695 - 11038 (-)
Gene ID: HRGMv2_0128_9_9
Type: pfam
Location: 11035 - 13011 (-)
Gene ID: HRGMv2_0128_9_10
Type: CAZyme
Location: 13419 - 17564 (-)
Gene ID: HRGMv2_0128_9_11
Type:
Location: 17931 - 22535 (+)
Gene ID: HRGMv2_0128_9_12
Type: CAZyme
Location: 23183 - 25846 (+)
Gene ID: HRGMv2_0128_9_13
Type: pfam
Location: 26291 - 28045 (+)
Gene ID: HRGMv2_0128_9_14
Type: TC
Location: 28172 - 29314 (+)
Gene ID: HRGMv2_0128_9_15
Type: TC
Location: 29376 - 30416 (+)
Gene ID: HRGMv2_0128_9_16
Type: TC
Location: 30788 - 32341 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0128_9_16 vegan > omnivore 1.12809 0.00181
HRGMv2_0128_9_16 vegetarian > omnivore 1.09587 0.01057

🧭 Explore Read Mapping of CGC

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