dbCAN Logo

Cluster: HRGMv2_0113_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0113_1 HRGMv2_0113_1_209 259702 260739 + GT2
CAZyme HRGMv2_0113_1 HRGMv2_0113_1_210 260723 262330 + GT83
TC HRGMv2_0113_1 HRGMv2_0113_1_211 262461 264467 - 3.A.1.5.23
TC HRGMv2_0113_1 HRGMv2_0113_1_212 264485 265435 - 3.A.1.5.35
TC HRGMv2_0113_1 HRGMv2_0113_1_213 265459 266385 - 3.A.1.5.35
TC HRGMv2_0113_1 HRGMv2_0113_1_214 266629 268278 - 3.A.1.5.35
pfam HRGMv2_0113_1 HRGMv2_0113_1_215 268528 269469 - Phage_integrase | Phage_int_SAM_1
TC HRGMv2_0113_1 HRGMv2_0113_1_216 269564 270400 + 3.A.1.125.3
TC HRGMv2_0113_1 HRGMv2_0113_1_217 270397 273258 + 3.A.1.125.3
Gene ID: HRGMv2_0113_1_209
Type: CAZyme
Location: 259702 - 260739 (+)
Gene ID: HRGMv2_0113_1_210
Type: CAZyme
Location: 260723 - 262330 (+)
Gene ID: HRGMv2_0113_1_211
Type: TC
Location: 262461 - 264467 (-)
Gene ID: HRGMv2_0113_1_212
Type: TC
Location: 264485 - 265435 (-)
Gene ID: HRGMv2_0113_1_213
Type: TC
Location: 265459 - 266385 (-)
Gene ID: HRGMv2_0113_1_214
Type: TC
Location: 266629 - 268278 (-)
Gene ID: HRGMv2_0113_1_215
Type: pfam
Location: 268528 - 269469 (-)
Gene ID: HRGMv2_0113_1_216
Type: TC
Location: 269564 - 270400 (+)
Gene ID: HRGMv2_0113_1_217
Type: TC
Location: 270397 - 273258 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0113_1_214 vegan > omnivore 1.16062 0.01711

🧭 Explore Read Mapping of CGC

← Back to Cluster List