Cluster: HRGMv2_0113_CGC28
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0113
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0113_18 | HRGMv2_0113_18_3 | 2202 | 3407 | + | 8.A.3.1.2 |
| pfam | HRGMv2_0113_18 | HRGMv2_0113_18_4 | 3623 | 5167 | + | FIVAR |
| TC | HRGMv2_0113_18 | HRGMv2_0113_18_5 | 5361 | 7184 | - | 4.C.1.1.14 |
| pfam | HRGMv2_0113_18 | HRGMv2_0113_18_6 | 7484 | 8359 | + | SOR_SNZ | ThiG |
| peptidase | HRGMv2_0113_18 | HRGMv2_0113_18_7 | 8443 | 9063 | + | C26.A32 |
| TC | HRGMv2_0113_18 | HRGMv2_0113_18_8 | 9201 | 12794 | + | 3.A.1.106.12 |
| CAZyme | HRGMv2_0113_18 | HRGMv2_0113_18_9 | 12958 | 15075 | + | GH42 |
Gene ID: HRGMv2_0113_18_3
Type: TC
Location: 2202 - 3407 (+)
Type: TC
Location: 2202 - 3407 (+)
Gene ID: HRGMv2_0113_18_4
Type: pfam
Location: 3623 - 5167 (+)
Type: pfam
Location: 3623 - 5167 (+)
Gene ID: HRGMv2_0113_18_5
Type: TC
Location: 5361 - 7184 (-)
Type: TC
Location: 5361 - 7184 (-)
Gene ID: HRGMv2_0113_18_6
Type: pfam
Location: 7484 - 8359 (+)
Type: pfam
Location: 7484 - 8359 (+)
Gene ID: HRGMv2_0113_18_7
Type: peptidase
Location: 8443 - 9063 (+)
Type: peptidase
Location: 8443 - 9063 (+)
Gene ID: HRGMv2_0113_18_8
Type: TC
Location: 9201 - 12794 (+)
Type: TC
Location: 9201 - 12794 (+)
Gene ID: HRGMv2_0113_18_9
Type: CAZyme
Location: 12958 - 15075 (+)
Type: CAZyme
Location: 12958 - 15075 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium merycicum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.