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Cluster: HRGMv2_0113_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0113_13 HRGMv2_0113_13_22 24639 26705 - GH42
CAZyme HRGMv2_0113_13 HRGMv2_0113_13_23 26825 28855 - GH31_3
CAZyme HRGMv2_0113_13 HRGMv2_0113_13_24 29225 30457 - GH172
TC HRGMv2_0113_13 HRGMv2_0113_13_25 30474 31352 - 3.A.1.1.39
TC HRGMv2_0113_13 HRGMv2_0113_13_26 31415 32353 - 3.A.1.1.18
STP HRGMv2_0113_13 HRGMv2_0113_13_27 32487 33794 - SBP_bac_1
TF HRGMv2_0113_13 HRGMv2_0113_13_28 33972 35009 - LacI
CAZyme HRGMv2_0113_13 HRGMv2_0113_13_29 35223 37352 - GH3
CAZyme HRGMv2_0113_13 HRGMv2_0113_13_30 37406 38884 - GH29
STP HRGMv2_0113_13 HRGMv2_0113_13_31 39057 40811 - SBP_bac_1
TC HRGMv2_0113_13 HRGMv2_0113_13_32 41019 41939 - 3.A.1.1.29
TC HRGMv2_0113_13 HRGMv2_0113_13_33 41969 43012 - 3.A.1.1.29
Gene ID: HRGMv2_0113_13_22
Type: CAZyme
Location: 24639 - 26705 (-)
Gene ID: HRGMv2_0113_13_23
Type: CAZyme
Location: 26825 - 28855 (-)
Gene ID: HRGMv2_0113_13_24
Type: CAZyme
Location: 29225 - 30457 (-)
Gene ID: HRGMv2_0113_13_25
Type: TC
Location: 30474 - 31352 (-)
Gene ID: HRGMv2_0113_13_26
Type: TC
Location: 31415 - 32353 (-)
Gene ID: HRGMv2_0113_13_27
Type: STP
Location: 32487 - 33794 (-)
Gene ID: HRGMv2_0113_13_28
Type: TF
Location: 33972 - 35009 (-)
Gene ID: HRGMv2_0113_13_29
Type: CAZyme
Location: 35223 - 37352 (-)
Gene ID: HRGMv2_0113_13_30
Type: CAZyme
Location: 37406 - 38884 (-)
Gene ID: HRGMv2_0113_13_31
Type: STP
Location: 39057 - 40811 (-)
Gene ID: HRGMv2_0113_13_32
Type: TC
Location: 41019 - 41939 (-)
Gene ID: HRGMv2_0113_13_33
Type: TC
Location: 41969 - 43012 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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