Cluster: HRGMv2_0111_CGC9

🧬 Cluster Details

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
CAZyme	HRGMv2_0111_163	HRGMv2_0111_163_28	25830	26978	-	GT4
CAZyme	HRGMv2_0111_163	HRGMv2_0111_163_29	27046	28188	+	GT4
CAZyme	HRGMv2_0111_163	HRGMv2_0111_163_30	28185	29288	+	GT2
CAZyme	HRGMv2_0111_163	HRGMv2_0111_163_31	29363	30637	+	GT4
pfam	HRGMv2_0111_163	HRGMv2_0111_163_32	30630	31556	+	3Beta_HSD \| Epimerase \| Polysacc_synt_2 \| RmlD_sub_bind \| NmrA \| NAD_binding_10 \| GDP_Man_Dehyd
CAZyme	HRGMv2_0111_163	HRGMv2_0111_163_33	31546	32514	+	GT2
TC	HRGMv2_0111_163	HRGMv2_0111_163_34	32546	33481	+	3.A.1.103.4
TC	HRGMv2_0111_163	HRGMv2_0111_163_35	33481	34656	+	3.A.1.103.5
pfam	HRGMv2_0111_163	HRGMv2_0111_163_36	34783	35790	+	3Beta_HSD \| Epimerase \| Polysacc_synt_2 \| RmlD_sub_bind \| NAD_binding_4 \| NAD_binding_10 \| GDP_Man_Dehyd
CAZyme	HRGMv2_0111_163	HRGMv2_0111_163_37	35771	36769	+	GT2
NULL(UNKNOWN)	HRGMv2_0111_163	HRGMv2_0111_163_38	36773	37504	-	NULL(UNKNOWN) [View Structural Homologs]
TF	HRGMv2_0111_163	HRGMv2_0111_163_39	37696	37992	+	Whib
CAZyme	HRGMv2_0111_163	HRGMv2_0111_163_40	37989	41150	+	GT2

Gene ID: HRGMv2_0111_163_28
Type: CAZyme
Location: 25830 - 26978 (-)

Gene ID: HRGMv2_0111_163_29
Type: CAZyme
Location: 27046 - 28188 (+)

Gene ID: HRGMv2_0111_163_30
Type: CAZyme
Location: 28185 - 29288 (+)

Gene ID: HRGMv2_0111_163_31
Type: CAZyme
Location: 29363 - 30637 (+)

Gene ID: HRGMv2_0111_163_32
Type: pfam
Location: 30630 - 31556 (+)

Gene ID: HRGMv2_0111_163_33
Type: CAZyme
Location: 31546 - 32514 (+)

Gene ID: HRGMv2_0111_163_34
Type: TC
Location: 32546 - 33481 (+)

Gene ID: HRGMv2_0111_163_35
Type: TC
Location: 33481 - 34656 (+)

Gene ID: HRGMv2_0111_163_36
Type: pfam
Location: 34783 - 35790 (+)

Gene ID: HRGMv2_0111_163_37
Type: CAZyme
Location: 35771 - 36769 (+)

Gene ID: HRGMv2_0111_163_38
Type:
Location: 36773 - 37504 (-)

Gene ID: HRGMv2_0111_163_39
Type: TF
Location: 37696 - 37992 (+)

Gene ID: HRGMv2_0111_163_40
Type: CAZyme
Location: 37989 - 41150 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_0111_163_39	omnivore > vegetarian	22.07283	0.00553