dbCAN Logo

Cluster: HRGMv2_0107_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0107_2 HRGMv2_0107_2_216 259878 261227 + 3.A.1.1.40
TC HRGMv2_0107_2 HRGMv2_0107_2_217 261362 262261 + 3.A.1.1.48
TC HRGMv2_0107_2 HRGMv2_0107_2_218 262296 263306 + 3.A.1.1.48
CAZyme HRGMv2_0107_2 HRGMv2_0107_2_219 263479 265575 + GH42
TF HRGMv2_0107_2 HRGMv2_0107_2_220 265618 266685 + LacI
CAZyme HRGMv2_0107_2 HRGMv2_0107_2_221 266897 267904 - CE20
NULL(UNKNOWN) HRGMv2_0107_2 HRGMv2_0107_2_222 267850 268161 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0107_2 HRGMv2_0107_2_223 268335 270263 + 3.A.3.25.3
pfam HRGMv2_0107_2 HRGMv2_0107_2_224 270276 271310 + F_bP_aldolase
pfam HRGMv2_0107_2 HRGMv2_0107_2_225 271725 273026 + Adenylsucc_synt
TC HRGMv2_0107_2 HRGMv2_0107_2_226 273108 273692 + 1.A.43.3.3
Gene ID: HRGMv2_0107_2_216
Type: TC
Location: 259878 - 261227 (+)
Gene ID: HRGMv2_0107_2_217
Type: TC
Location: 261362 - 262261 (+)
Gene ID: HRGMv2_0107_2_218
Type: TC
Location: 262296 - 263306 (+)
Gene ID: HRGMv2_0107_2_219
Type: CAZyme
Location: 263479 - 265575 (+)
Gene ID: HRGMv2_0107_2_220
Type: TF
Location: 265618 - 266685 (+)
Gene ID: HRGMv2_0107_2_221
Type: CAZyme
Location: 266897 - 267904 (-)
Gene ID: HRGMv2_0107_2_222
Type:
Location: 267850 - 268161 (-)
Gene ID: HRGMv2_0107_2_223
Type: TC
Location: 268335 - 270263 (+)
Gene ID: HRGMv2_0107_2_224
Type: pfam
Location: 270276 - 271310 (+)
Gene ID: HRGMv2_0107_2_225
Type: pfam
Location: 271725 - 273026 (+)
Gene ID: HRGMv2_0107_2_226
Type: TC
Location: 273108 - 273692 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List