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Cluster: HRGMv2_0107_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0107_2 HRGMv2_0107_2_31 36212 37753 - 2.A.1.2.93
TC HRGMv2_0107_2 HRGMv2_0107_2_32 38156 39034 - 3.A.1.1.45
TC HRGMv2_0107_2 HRGMv2_0107_2_33 39034 39912 - 3.A.1.1.45
STP HRGMv2_0107_2 HRGMv2_0107_2_34 40079 41359 - SBP_bac_1
pfam HRGMv2_0107_2 HRGMv2_0107_2_35 41529 42140 - DUF624
CAZyme HRGMv2_0107_2 HRGMv2_0107_2_36 42283 43785 - GH13_18
TF HRGMv2_0107_2 HRGMv2_0107_2_37 44208 45371 - LacI
CAZyme HRGMv2_0107_2 HRGMv2_0107_2_38 45407 47884 - GH36
Gene ID: HRGMv2_0107_2_31
Type: TC
Location: 36212 - 37753 (-)
Gene ID: HRGMv2_0107_2_32
Type: TC
Location: 38156 - 39034 (-)
Gene ID: HRGMv2_0107_2_33
Type: TC
Location: 39034 - 39912 (-)
Gene ID: HRGMv2_0107_2_34
Type: STP
Location: 40079 - 41359 (-)
Gene ID: HRGMv2_0107_2_35
Type: pfam
Location: 41529 - 42140 (-)
Gene ID: HRGMv2_0107_2_36
Type: CAZyme
Location: 42283 - 43785 (-)
Gene ID: HRGMv2_0107_2_37
Type: TF
Location: 44208 - 45371 (-)
Gene ID: HRGMv2_0107_2_38
Type: CAZyme
Location: 45407 - 47884 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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