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Cluster: HRGMv2_0107_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0107_2 HRGMv2_0107_2_5 2635 4068 - 2.A.3.1.10
CAZyme HRGMv2_0107_2 HRGMv2_0107_2_6 4216 6456 - GH3
CAZyme HRGMv2_0107_2 HRGMv2_0107_2_7 6489 8609 - GH42
CAZyme HRGMv2_0107_2 HRGMv2_0107_2_8 8685 10028 - GH30_2
TC HRGMv2_0107_2 HRGMv2_0107_2_9 10100 11359 - 2.A.1.2.93
NULL(UNKNOWN) HRGMv2_0107_2 HRGMv2_0107_2_10 11946 13631 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0107_2 HRGMv2_0107_2_11 13888 15417 + 2.A.3.1.3
NULL(UNKNOWN) HRGMv2_0107_2 HRGMv2_0107_2_12 15483 15686 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0107_2 HRGMv2_0107_2_13 15690 16196 - FMN_bind
TC HRGMv2_0107_2 HRGMv2_0107_2_14 16213 17007 - 3.A.1.122.8
TC HRGMv2_0107_2 HRGMv2_0107_2_15 17028 18254 - 3.A.1.122.8
TC HRGMv2_0107_2 HRGMv2_0107_2_16 18244 19572 - 3.A.1.122.8
pfam HRGMv2_0107_2 HRGMv2_0107_2_17 19587 20870 - FtrD-like
TC HRGMv2_0107_2 HRGMv2_0107_2_18 20979 21614 - 2.A.108.2.10
TC HRGMv2_0107_2 HRGMv2_0107_2_19 21690 23459 - 2.A.108.2.11
pfam HRGMv2_0107_2 HRGMv2_0107_2_20 23600 24484 + ApbE
TC HRGMv2_0107_2 HRGMv2_0107_2_21 24493 25971 - 2.A.3.1.20
Gene ID: HRGMv2_0107_2_5
Type: TC
Location: 2635 - 4068 (-)
Gene ID: HRGMv2_0107_2_6
Type: CAZyme
Location: 4216 - 6456 (-)
Gene ID: HRGMv2_0107_2_7
Type: CAZyme
Location: 6489 - 8609 (-)
Gene ID: HRGMv2_0107_2_8
Type: CAZyme
Location: 8685 - 10028 (-)
Gene ID: HRGMv2_0107_2_9
Type: TC
Location: 10100 - 11359 (-)
Gene ID: HRGMv2_0107_2_10
Type:
Location: 11946 - 13631 (+)
Gene ID: HRGMv2_0107_2_11
Type: TC
Location: 13888 - 15417 (+)
Gene ID: HRGMv2_0107_2_12
Type:
Location: 15483 - 15686 (+)
Gene ID: HRGMv2_0107_2_13
Type: pfam
Location: 15690 - 16196 (-)
Gene ID: HRGMv2_0107_2_14
Type: TC
Location: 16213 - 17007 (-)
Gene ID: HRGMv2_0107_2_15
Type: TC
Location: 17028 - 18254 (-)
Gene ID: HRGMv2_0107_2_16
Type: TC
Location: 18244 - 19572 (-)
Gene ID: HRGMv2_0107_2_17
Type: pfam
Location: 19587 - 20870 (-)
Gene ID: HRGMv2_0107_2_18
Type: TC
Location: 20979 - 21614 (-)
Gene ID: HRGMv2_0107_2_19
Type: TC
Location: 21690 - 23459 (-)
Gene ID: HRGMv2_0107_2_20
Type: pfam
Location: 23600 - 24484 (+)
Gene ID: HRGMv2_0107_2_21
Type: TC
Location: 24493 - 25971 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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