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Cluster: HRGMv2_0107_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0107_6 HRGMv2_0107_6_32 34416 35900 + 3.A.1.5.17
TC HRGMv2_0107_6 HRGMv2_0107_6_33 35897 37024 + 3.A.1.5.11
TC HRGMv2_0107_6 HRGMv2_0107_6_34 37024 37899 + 3.A.1.5.42
TC HRGMv2_0107_6 HRGMv2_0107_6_35 37901 38677 + 3.A.1.5.18
TC HRGMv2_0107_6 HRGMv2_0107_6_36 38680 39372 + 3.A.1.5.32
pfam HRGMv2_0107_6 HRGMv2_0107_6_37 39831 40436 - Sod_Fe_N | Sod_Fe_C
CAZyme HRGMv2_0107_6 HRGMv2_0107_6_38 40541 43684 - GH2
TF HRGMv2_0107_6 HRGMv2_0107_6_39 43717 44976 - LacI
TC HRGMv2_0107_6 HRGMv2_0107_6_40 45314 46246 + 3.A.1.1.48
TC HRGMv2_0107_6 HRGMv2_0107_6_41 46259 47245 + 3.A.1.1.48
TC HRGMv2_0107_6 HRGMv2_0107_6_42 47549 48898 + 3.A.1.1.34
Gene ID: HRGMv2_0107_6_32
Type: TC
Location: 34416 - 35900 (+)
Gene ID: HRGMv2_0107_6_33
Type: TC
Location: 35897 - 37024 (+)
Gene ID: HRGMv2_0107_6_34
Type: TC
Location: 37024 - 37899 (+)
Gene ID: HRGMv2_0107_6_35
Type: TC
Location: 37901 - 38677 (+)
Gene ID: HRGMv2_0107_6_36
Type: TC
Location: 38680 - 39372 (+)
Gene ID: HRGMv2_0107_6_37
Type: pfam
Location: 39831 - 40436 (-)
Gene ID: HRGMv2_0107_6_38
Type: CAZyme
Location: 40541 - 43684 (-)
Gene ID: HRGMv2_0107_6_39
Type: TF
Location: 43717 - 44976 (-)
Gene ID: HRGMv2_0107_6_40
Type: TC
Location: 45314 - 46246 (+)
Gene ID: HRGMv2_0107_6_41
Type: TC
Location: 46259 - 47245 (+)
Gene ID: HRGMv2_0107_6_42
Type: TC
Location: 47549 - 48898 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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