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Cluster: HRGMv2_0107_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0107_3 HRGMv2_0107_3_24 24069 25274 + 3.A.1.17.8
pfam HRGMv2_0107_3 HRGMv2_0107_3_25 25275 26267 + IU_nuc_hydro
TC HRGMv2_0107_3 HRGMv2_0107_3_26 26667 29288 + 3.A.9.1.2
STP HRGMv2_0107_3 HRGMv2_0107_3_27 29390 29977 + NUDIX
pfam HRGMv2_0107_3 HRGMv2_0107_3_28 29974 30471 + Acetyltransf_1 | Acetyltransf_3
CAZyme HRGMv2_0107_3 HRGMv2_0107_3_29 30566 31753 - GH1
TC HRGMv2_0107_3 HRGMv2_0107_3_30 31775 32617 - 3.A.1.1.34
TC HRGMv2_0107_3 HRGMv2_0107_3_31 32629 33546 - 3.A.1.1.36
STP HRGMv2_0107_3 HRGMv2_0107_3_32 33546 34814 - SBP_bac_1
TF HRGMv2_0107_3 HRGMv2_0107_3_33 35084 36178 - LacI
TC HRGMv2_0107_3 HRGMv2_0107_3_34 36280 38751 - 3.A.3.5.4
Gene ID: HRGMv2_0107_3_24
Type: TC
Location: 24069 - 25274 (+)
Gene ID: HRGMv2_0107_3_25
Type: pfam
Location: 25275 - 26267 (+)
Gene ID: HRGMv2_0107_3_26
Type: TC
Location: 26667 - 29288 (+)
Gene ID: HRGMv2_0107_3_27
Type: STP
Location: 29390 - 29977 (+)
Gene ID: HRGMv2_0107_3_28
Type: pfam
Location: 29974 - 30471 (+)
Gene ID: HRGMv2_0107_3_29
Type: CAZyme
Location: 30566 - 31753 (-)
Gene ID: HRGMv2_0107_3_30
Type: TC
Location: 31775 - 32617 (-)
Gene ID: HRGMv2_0107_3_31
Type: TC
Location: 32629 - 33546 (-)
Gene ID: HRGMv2_0107_3_32
Type: STP
Location: 33546 - 34814 (-)
Gene ID: HRGMv2_0107_3_33
Type: TF
Location: 35084 - 36178 (-)
Gene ID: HRGMv2_0107_3_34
Type: TC
Location: 36280 - 38751 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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