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Cluster: HRGMv2_0085_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0085_4 HRGMv2_0085_4_19 27963 30242 + GH13_11
pfam HRGMv2_0085_4 HRGMv2_0085_4_20 30337 31449 + tRNA-synt_1b
TC HRGMv2_0085_4 HRGMv2_0085_4_21 31460 32221 + 3.A.1.17.13
TC HRGMv2_0085_4 HRGMv2_0085_4_22 32311 33402 - 3.A.1.17.8
CAZyme HRGMv2_0085_4 HRGMv2_0085_4_23 33683 36070 + GT35
NULL(UNKNOWN) HRGMv2_0085_4 HRGMv2_0085_4_24 36212 39502 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0085_4 HRGMv2_0085_4_25 39653 40972 - MatE | MatE
CAZyme HRGMv2_0085_4 HRGMv2_0085_4_26 41229 43409 + GH13_3
NULL(UNKNOWN) HRGMv2_0085_4 HRGMv2_0085_4_27 43421 44950 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0085_4 HRGMv2_0085_4_28 45132 47318 + CBM48 | GH13_9
TC HRGMv2_0085_4 HRGMv2_0085_4_29 47538 49217 + 2.A.14.1.3
Gene ID: HRGMv2_0085_4_19
Type: CAZyme
Location: 27963 - 30242 (+)
Gene ID: HRGMv2_0085_4_20
Type: pfam
Location: 30337 - 31449 (+)
Gene ID: HRGMv2_0085_4_21
Type: TC
Location: 31460 - 32221 (+)
Gene ID: HRGMv2_0085_4_22
Type: TC
Location: 32311 - 33402 (-)
Gene ID: HRGMv2_0085_4_23
Type: CAZyme
Location: 33683 - 36070 (+)
Gene ID: HRGMv2_0085_4_24
Type:
Location: 36212 - 39502 (-)
Gene ID: HRGMv2_0085_4_25
Type: pfam
Location: 39653 - 40972 (-)
Gene ID: HRGMv2_0085_4_26
Type: CAZyme
Location: 41229 - 43409 (+)
Gene ID: HRGMv2_0085_4_27
Type:
Location: 43421 - 44950 (+)
Gene ID: HRGMv2_0085_4_28
Type: CAZyme
Location: 45132 - 47318 (+)
Gene ID: HRGMv2_0085_4_29
Type: TC
Location: 47538 - 49217 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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