Cluster: HRGMv2_0082_CGC6
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0082
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0082_2 | HRGMv2_0082_2_25 | 33342 | 34031 | - | 2.A.88.1.8 |
| sulfatase | HRGMv2_0082_2 | HRGMv2_0082_2_26 | 34182 | 36029 | + | S1_37 |
| TC | HRGMv2_0082_2 | HRGMv2_0082_2_27 | 36026 | 37678 | + | 3.B.1.1.2 |
| pfam | HRGMv2_0082_2 | HRGMv2_0082_2_28 | 37832 | 47380 | + | ketoacyl-synt | Acyl_transf_1 | MaoC_dehydratas | Ketoacyl-synt_C | Fas1-AflB-like_hel | SAT | DNA_pol_B_N | FAS_I_H | FAS_AT_central |
| CAZyme | HRGMv2_0082_2 | HRGMv2_0082_2_29 | 47970 | 54017 | + | CBM25 | CBM41 | CBM41 | GH13_14 | GH13_32 |
| pfam | HRGMv2_0082_2 | HRGMv2_0082_2_30 | 55220 | 64414 | - | Rib | Rib | Rib | Rib | Rib | Rib | Rib | Rib | Rib | Rib | Rib | Rib | Rib | Rib | Rib | Big_6 | Big_6 | GspA_SrpA_N | GspA_SrpA_N |
| pfam | HRGMv2_0082_2 | HRGMv2_0082_2_31 | 64986 | 65462 | + | ACPS |
| CAZyme | HRGMv2_0082_2 | HRGMv2_0082_2_32 | 65925 | 67835 | + | GH25 |
| sulfatase | HRGMv2_0082_2 | HRGMv2_0082_2_33 | 68427 | 70121 | + | S1_2 |
| NULL(UNKNOWN) | HRGMv2_0082_2 | HRGMv2_0082_2_34 | 70840 | 71052 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0082_2 | HRGMv2_0082_2_35 | 71190 | 72938 | + | 3.A.1.17.9 |
| TC | HRGMv2_0082_2 | HRGMv2_0082_2_36 | 73047 | 74597 | + | 3.A.1.17.5 |
Gene ID: HRGMv2_0082_2_25
Type: TC
Location: 33342 - 34031 (-)
Type: TC
Location: 33342 - 34031 (-)
Gene ID: HRGMv2_0082_2_26
Type: sulfatase
Location: 34182 - 36029 (+)
Type: sulfatase
Location: 34182 - 36029 (+)
Gene ID: HRGMv2_0082_2_27
Type: TC
Location: 36026 - 37678 (+)
Type: TC
Location: 36026 - 37678 (+)
Gene ID: HRGMv2_0082_2_28
Type: pfam
Location: 37832 - 47380 (+)
Type: pfam
Location: 37832 - 47380 (+)
Gene ID: HRGMv2_0082_2_29
Type: CAZyme
Location: 47970 - 54017 (+)
Type: CAZyme
Location: 47970 - 54017 (+)
Gene ID: HRGMv2_0082_2_30
Type: pfam
Location: 55220 - 64414 (-)
Type: pfam
Location: 55220 - 64414 (-)
Gene ID: HRGMv2_0082_2_31
Type: pfam
Location: 64986 - 65462 (+)
Type: pfam
Location: 64986 - 65462 (+)
Gene ID: HRGMv2_0082_2_32
Type: CAZyme
Location: 65925 - 67835 (+)
Type: CAZyme
Location: 65925 - 67835 (+)
Gene ID: HRGMv2_0082_2_33
Type: sulfatase
Location: 68427 - 70121 (+)
Type: sulfatase
Location: 68427 - 70121 (+)
Gene ID: HRGMv2_0082_2_34
Type:
Location: 70840 - 71052 (+)
Type:
Location: 70840 - 71052 (+)
Gene ID: HRGMv2_0082_2_35
Type: TC
Location: 71190 - 72938 (+)
Type: TC
Location: 71190 - 72938 (+)
Gene ID: HRGMv2_0082_2_36
Type: TC
Location: 73047 - 74597 (+)
Type: TC
Location: 73047 - 74597 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium vaginale
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.