Cluster: HRGMv2_0082_CGC18
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0082
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0082_13 | HRGMv2_0082_13_25 | 28869 | 31613 | - | 3.A.3.23.1 |
| NULL(UNKNOWN) | HRGMv2_0082_13 | HRGMv2_0082_13_26 | 31657 | 32391 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_0082_13 | HRGMv2_0082_13_27 | 32438 | 33550 | - | LacI |
| CAZyme | HRGMv2_0082_13 | HRGMv2_0082_13_28 | 33645 | 35276 | - | GH31_19 |
| STP | HRGMv2_0082_13 | HRGMv2_0082_13_29 | 35587 | 36840 | + | SBP_bac_1 |
| TC | HRGMv2_0082_13 | HRGMv2_0082_13_30 | 36984 | 37928 | + | 3.A.1.1.7 |
| TC | HRGMv2_0082_13 | HRGMv2_0082_13_31 | 37928 | 38758 | + | 3.A.1.1.39 |
| CAZyme | HRGMv2_0082_13 | HRGMv2_0082_13_32 | 38799 | 40856 | + | GH16_24 |
| pfam | HRGMv2_0082_13 | HRGMv2_0082_13_33 | 41336 | 47653 | - | GA | GA | GA | GA | FIVAR | FIVAR | FIVAR | FIVAR | FIVAR | FIVAR | FIVAR | FIVAR | FIVAR | aRib | aRib | aRib | aRib |
| pfam | HRGMv2_0082_13 | HRGMv2_0082_13_34 | 48144 | 49142 | - | FemAB | Acetyltransf_6 |
| TC | HRGMv2_0082_13 | HRGMv2_0082_13_35 | 49213 | 50889 | - | 3.A.1.120.6 |
| pfam | HRGMv2_0082_13 | HRGMv2_0082_13_36 | 51032 | 51541 | - | DUF3180 |
| NULL(UNKNOWN) | HRGMv2_0082_13 | HRGMv2_0082_13_37 | 51541 | 52602 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0082_13 | HRGMv2_0082_13_38 | 52700 | 54955 | - | 3.A.16.1.1 |
Gene ID: HRGMv2_0082_13_25
Type: TC
Location: 28869 - 31613 (-)
Type: TC
Location: 28869 - 31613 (-)
Gene ID: HRGMv2_0082_13_26
Type:
Location: 31657 - 32391 (-)
Type:
Location: 31657 - 32391 (-)
Gene ID: HRGMv2_0082_13_27
Type: TF
Location: 32438 - 33550 (-)
Type: TF
Location: 32438 - 33550 (-)
Gene ID: HRGMv2_0082_13_28
Type: CAZyme
Location: 33645 - 35276 (-)
Type: CAZyme
Location: 33645 - 35276 (-)
Gene ID: HRGMv2_0082_13_29
Type: STP
Location: 35587 - 36840 (+)
Type: STP
Location: 35587 - 36840 (+)
Gene ID: HRGMv2_0082_13_30
Type: TC
Location: 36984 - 37928 (+)
Type: TC
Location: 36984 - 37928 (+)
Gene ID: HRGMv2_0082_13_31
Type: TC
Location: 37928 - 38758 (+)
Type: TC
Location: 37928 - 38758 (+)
Gene ID: HRGMv2_0082_13_32
Type: CAZyme
Location: 38799 - 40856 (+)
Type: CAZyme
Location: 38799 - 40856 (+)
Gene ID: HRGMv2_0082_13_33
Type: pfam
Location: 41336 - 47653 (-)
Type: pfam
Location: 41336 - 47653 (-)
Gene ID: HRGMv2_0082_13_34
Type: pfam
Location: 48144 - 49142 (-)
Type: pfam
Location: 48144 - 49142 (-)
Gene ID: HRGMv2_0082_13_35
Type: TC
Location: 49213 - 50889 (-)
Type: TC
Location: 49213 - 50889 (-)
Gene ID: HRGMv2_0082_13_36
Type: pfam
Location: 51032 - 51541 (-)
Type: pfam
Location: 51032 - 51541 (-)
Gene ID: HRGMv2_0082_13_37
Type:
Location: 51541 - 52602 (-)
Type:
Location: 51541 - 52602 (-)
Gene ID: HRGMv2_0082_13_38
Type: TC
Location: 52700 - 54955 (-)
Type: TC
Location: 52700 - 54955 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium vaginale
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.