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Cluster: HRGMv2_0082_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0082_12 HRGMv2_0082_12_2 8023 10809 - GH31_15
TC HRGMv2_0082_12 HRGMv2_0082_12_3 10825 11658 - 3.A.1.1.36
TC HRGMv2_0082_12 HRGMv2_0082_12_4 11655 12590 - 3.A.1.1.20
TC HRGMv2_0082_12 HRGMv2_0082_12_5 12661 14049 - 3.A.1.1.41
TF HRGMv2_0082_12 HRGMv2_0082_12_6 14308 15324 + LacI
pfam HRGMv2_0082_12 HRGMv2_0082_12_7 15308 16081 - TraX
CAZyme HRGMv2_0082_12 HRGMv2_0082_12_8 16392 18101 - GH13_44
pfam HRGMv2_0082_12 HRGMv2_0082_12_9 18525 19754 + SBP_bac_1 | SBP_bac_8
TC HRGMv2_0082_12 HRGMv2_0082_12_10 19915 21318 + 3.A.1.1.27
TC HRGMv2_0082_12 HRGMv2_0082_12_11 21315 22235 + 3.A.1.1.27
CAZyme HRGMv2_0082_12 HRGMv2_0082_12_12 22341 24332 + GH13_14
NULL(UNKNOWN) HRGMv2_0082_12 HRGMv2_0082_12_13 24778 27543 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0082_12 HRGMv2_0082_12_14 27795 30047 + GH77
TC HRGMv2_0082_12 HRGMv2_0082_12_15 30379 30993 - 9.B.28.1.3
TC HRGMv2_0082_12 HRGMv2_0082_12_16 31141 31974 - 3.A.1.1.45
TC HRGMv2_0082_12 HRGMv2_0082_12_17 31971 32825 - 3.A.1.1.45
TF HRGMv2_0082_12 HRGMv2_0082_12_18 33175 34194 + LacI
TC HRGMv2_0082_12 HRGMv2_0082_12_19 34446 35789 - 3.A.1.1.45
Gene ID: HRGMv2_0082_12_2
Type: CAZyme
Location: 8023 - 10809 (-)
Gene ID: HRGMv2_0082_12_3
Type: TC
Location: 10825 - 11658 (-)
Gene ID: HRGMv2_0082_12_4
Type: TC
Location: 11655 - 12590 (-)
Gene ID: HRGMv2_0082_12_5
Type: TC
Location: 12661 - 14049 (-)
Gene ID: HRGMv2_0082_12_6
Type: TF
Location: 14308 - 15324 (+)
Gene ID: HRGMv2_0082_12_7
Type: pfam
Location: 15308 - 16081 (-)
Gene ID: HRGMv2_0082_12_8
Type: CAZyme
Location: 16392 - 18101 (-)
Gene ID: HRGMv2_0082_12_9
Type: pfam
Location: 18525 - 19754 (+)
Gene ID: HRGMv2_0082_12_10
Type: TC
Location: 19915 - 21318 (+)
Gene ID: HRGMv2_0082_12_11
Type: TC
Location: 21315 - 22235 (+)
Gene ID: HRGMv2_0082_12_12
Type: CAZyme
Location: 22341 - 24332 (+)
Gene ID: HRGMv2_0082_12_13
Type:
Location: 24778 - 27543 (+)
Gene ID: HRGMv2_0082_12_14
Type: CAZyme
Location: 27795 - 30047 (+)
Gene ID: HRGMv2_0082_12_15
Type: TC
Location: 30379 - 30993 (-)
Gene ID: HRGMv2_0082_12_16
Type: TC
Location: 31141 - 31974 (-)
Gene ID: HRGMv2_0082_12_17
Type: TC
Location: 31971 - 32825 (-)
Gene ID: HRGMv2_0082_12_18
Type: TF
Location: 33175 - 34194 (+)
Gene ID: HRGMv2_0082_12_19
Type: TC
Location: 34446 - 35789 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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