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Cluster: HRGMv2_0082_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0082_7 HRGMv2_0082_7_20 28238 29365 - GT2
CAZyme HRGMv2_0082_7 HRGMv2_0082_7_21 29376 30257 - GT2
pfam HRGMv2_0082_7 HRGMv2_0082_7_22 30259 31356 - Acyl_transf_3
pfam HRGMv2_0082_7 HRGMv2_0082_7_23 31349 33262 - RgpF
CAZyme HRGMv2_0082_7 HRGMv2_0082_7_24 33351 34637 - GT2
pfam HRGMv2_0082_7 HRGMv2_0082_7_25 34801 36495 + Glucos_trans_II
CAZyme HRGMv2_0082_7 HRGMv2_0082_7_26 36535 37506 - GT2
pfam HRGMv2_0082_7 HRGMv2_0082_7_27 37572 38414 - Epimerase
TC HRGMv2_0082_7 HRGMv2_0082_7_28 38729 39592 + 3.A.1.103.4
TC HRGMv2_0082_7 HRGMv2_0082_7_29 39643 40416 + 3.A.1.103.5
Gene ID: HRGMv2_0082_7_20
Type: CAZyme
Location: 28238 - 29365 (-)
Gene ID: HRGMv2_0082_7_21
Type: CAZyme
Location: 29376 - 30257 (-)
Gene ID: HRGMv2_0082_7_22
Type: pfam
Location: 30259 - 31356 (-)
Gene ID: HRGMv2_0082_7_23
Type: pfam
Location: 31349 - 33262 (-)
Gene ID: HRGMv2_0082_7_24
Type: CAZyme
Location: 33351 - 34637 (-)
Gene ID: HRGMv2_0082_7_25
Type: pfam
Location: 34801 - 36495 (+)
Gene ID: HRGMv2_0082_7_26
Type: CAZyme
Location: 36535 - 37506 (-)
Gene ID: HRGMv2_0082_7_27
Type: pfam
Location: 37572 - 38414 (-)
Gene ID: HRGMv2_0082_7_28
Type: TC
Location: 38729 - 39592 (+)
Gene ID: HRGMv2_0082_7_29
Type: TC
Location: 39643 - 40416 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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