Cluster: HRGMv2_0080_CGC8
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0080
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0080_4 | HRGMv2_0080_4_81 | 97978 | 103074 | - | GH2 |
| pfam | HRGMv2_0080_4 | HRGMv2_0080_4_82 | 103327 | 104640 | - | PGA_cap |
| TC | HRGMv2_0080_4 | HRGMv2_0080_4_83 | 104680 | 104928 | - | 3.A.5.2.2 |
Gene ID: HRGMv2_0080_4_81
Type: CAZyme
Location: 97978 - 103074 (-)
Type: CAZyme
Location: 97978 - 103074 (-)
Gene ID: HRGMv2_0080_4_82
Type: pfam
Location: 103327 - 104640 (-)
Type: pfam
Location: 103327 - 104640 (-)
Gene ID: HRGMv2_0080_4_83
Type: TC
Location: 104680 - 104928 (-)
Type: TC
Location: 104680 - 104928 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Species
Varibaculum timonense_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.