Cluster: HRGMv2_0080_CGC5
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0080
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0080_2 | HRGMv2_0080_2_223 | 262869 | 263981 | + | 9.B.146.1.6 |
| pfam | HRGMv2_0080_2 | HRGMv2_0080_2_224 | 263978 | 265417 | + | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | HRGMv2_0080_2 | HRGMv2_0080_2_225 | 265420 | 266766 | + | 2.A.103.1.3 |
| CAZyme | HRGMv2_0080_2 | HRGMv2_0080_2_226 | 266753 | 267874 | + | GT28 |
Gene ID: HRGMv2_0080_2_223
Type: TC
Location: 262869 - 263981 (+)
Type: TC
Location: 262869 - 263981 (+)
Gene ID: HRGMv2_0080_2_224
Type: pfam
Location: 263978 - 265417 (+)
Type: pfam
Location: 263978 - 265417 (+)
Gene ID: HRGMv2_0080_2_225
Type: TC
Location: 265420 - 266766 (+)
Type: TC
Location: 265420 - 266766 (+)
Gene ID: HRGMv2_0080_2_226
Type: CAZyme
Location: 266753 - 267874 (+)
Type: CAZyme
Location: 266753 - 267874 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Species
Varibaculum timonense_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.