Cluster: HRGMv2_0080_CGC2
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0080
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0080_1 | HRGMv2_0080_1_252 | 296442 | 297311 | + | 3.A.1.1.20 |
| TC | HRGMv2_0080_1 | HRGMv2_0080_1_253 | 297319 | 298152 | + | 3.A.1.1.6 |
| CAZyme | HRGMv2_0080_1 | HRGMv2_0080_1_254 | 298167 | 299972 | + | GH2 |
Gene ID: HRGMv2_0080_1_252
Type: TC
Location: 296442 - 297311 (+)
Type: TC
Location: 296442 - 297311 (+)
Gene ID: HRGMv2_0080_1_253
Type: TC
Location: 297319 - 298152 (+)
Type: TC
Location: 297319 - 298152 (+)
Gene ID: HRGMv2_0080_1_254
Type: CAZyme
Location: 298167 - 299972 (+)
Type: CAZyme
Location: 298167 - 299972 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Species
Varibaculum timonense_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.