Cluster: HRGMv2_0080_CGC16
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0080
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0080_9 | HRGMv2_0080_9_20 | 27136 | 28260 | - | GT4 |
| pfam | HRGMv2_0080_9 | HRGMv2_0080_9_21 | 28257 | 29207 | - | Lip_A_acyltrans |
| TC | HRGMv2_0080_9 | HRGMv2_0080_9_22 | 29204 | 29821 | - | 4.F.1.3.2 |
Gene ID: HRGMv2_0080_9_20
Type: CAZyme
Location: 27136 - 28260 (-)
Type: CAZyme
Location: 27136 - 28260 (-)
Gene ID: HRGMv2_0080_9_21
Type: pfam
Location: 28257 - 29207 (-)
Type: pfam
Location: 28257 - 29207 (-)
Gene ID: HRGMv2_0080_9_22
Type: TC
Location: 29204 - 29821 (-)
Type: TC
Location: 29204 - 29821 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Species
Varibaculum timonense_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.