Cluster: HRGMv2_0080_CGC13
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0080
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0080_6 | HRGMv2_0080_6_81 | 100076 | 100855 | - | 3.A.1.7.2 |
| TC | HRGMv2_0080_6 | HRGMv2_0080_6_82 | 100914 | 102053 | - | 3.A.1.7.2 |
| TC | HRGMv2_0080_6 | HRGMv2_0080_6_83 | 102054 | 103025 | - | 3.A.1.7.2 |
| TC | HRGMv2_0080_6 | HRGMv2_0080_6_84 | 103103 | 104203 | - | 3.A.1.7.2 |
| CAZyme | HRGMv2_0080_6 | HRGMv2_0080_6_85 | 104427 | 111920 | - | CBM32 | CBM32 | GH95 |
| CAZyme | HRGMv2_0080_6 | HRGMv2_0080_6_86 | 112148 | 115813 | - | CBM32 | GH84 |
Gene ID: HRGMv2_0080_6_81
Type: TC
Location: 100076 - 100855 (-)
Type: TC
Location: 100076 - 100855 (-)
Gene ID: HRGMv2_0080_6_82
Type: TC
Location: 100914 - 102053 (-)
Type: TC
Location: 100914 - 102053 (-)
Gene ID: HRGMv2_0080_6_83
Type: TC
Location: 102054 - 103025 (-)
Type: TC
Location: 102054 - 103025 (-)
Gene ID: HRGMv2_0080_6_84
Type: TC
Location: 103103 - 104203 (-)
Type: TC
Location: 103103 - 104203 (-)
Gene ID: HRGMv2_0080_6_85
Type: CAZyme
Location: 104427 - 111920 (-)
Type: CAZyme
Location: 104427 - 111920 (-)
Gene ID: HRGMv2_0080_6_86
Type: CAZyme
Location: 112148 - 115813 (-)
Type: CAZyme
Location: 112148 - 115813 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Species
Varibaculum timonense_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.