Cluster: HRGMv2_0072_CGC4
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0072
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0072_1 | HRGMv2_0072_1_240 | 292177 | 295296 | + | GH38 |
| CAZyme | HRGMv2_0072_1 | HRGMv2_0072_1_241 | 295427 | 298579 | + | GH38 |
| STP | HRGMv2_0072_1 | HRGMv2_0072_1_242 | 298966 | 300258 | + | SBP_bac_1 |
| TC | HRGMv2_0072_1 | HRGMv2_0072_1_243 | 300255 | 301226 | + | 3.A.1.1.42 |
| TC | HRGMv2_0072_1 | HRGMv2_0072_1_244 | 301226 | 302065 | + | 3.A.1.1.20 |
| CAZyme | HRGMv2_0072_1 | HRGMv2_0072_1_245 | 302092 | 303372 | + | GH5_18 |
| CAZyme | HRGMv2_0072_1 | HRGMv2_0072_1_246 | 303533 | 305785 | + | GH3 |
| CAZyme | HRGMv2_0072_1 | HRGMv2_0072_1_247 | 305930 | 307597 | + | GH18 |
| NULL(UNKNOWN) | HRGMv2_0072_1 | HRGMv2_0072_1_248 | 307746 | 307934 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0072_1 | HRGMv2_0072_1_249 | 308004 | 309461 | + | GH85 |
Gene ID: HRGMv2_0072_1_240
Type: CAZyme
Location: 292177 - 295296 (+)
Type: CAZyme
Location: 292177 - 295296 (+)
Gene ID: HRGMv2_0072_1_241
Type: CAZyme
Location: 295427 - 298579 (+)
Type: CAZyme
Location: 295427 - 298579 (+)
Gene ID: HRGMv2_0072_1_242
Type: STP
Location: 298966 - 300258 (+)
Type: STP
Location: 298966 - 300258 (+)
Gene ID: HRGMv2_0072_1_243
Type: TC
Location: 300255 - 301226 (+)
Type: TC
Location: 300255 - 301226 (+)
Gene ID: HRGMv2_0072_1_244
Type: TC
Location: 301226 - 302065 (+)
Type: TC
Location: 301226 - 302065 (+)
Gene ID: HRGMv2_0072_1_245
Type: CAZyme
Location: 302092 - 303372 (+)
Type: CAZyme
Location: 302092 - 303372 (+)
Gene ID: HRGMv2_0072_1_246
Type: CAZyme
Location: 303533 - 305785 (+)
Type: CAZyme
Location: 303533 - 305785 (+)
Gene ID: HRGMv2_0072_1_247
Type: CAZyme
Location: 305930 - 307597 (+)
Type: CAZyme
Location: 305930 - 307597 (+)
Gene ID: HRGMv2_0072_1_248
Type:
Location: 307746 - 307934 (+)
Type:
Location: 307746 - 307934 (+)
Gene ID: HRGMv2_0072_1_249
Type: CAZyme
Location: 308004 - 309461 (+)
Type: CAZyme
Location: 308004 - 309461 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium sp002742445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0072_1_240 | vegetarian > omnivore | 1.66784 | 0.00609 |
| HRGMv2_0072_1_241 | vegan > omnivore | 1.01959 | 0.00565 |
| HRGMv2_0072_1_241 | vegetarian > omnivore | 1.57026 | 0.00609 |
| HRGMv2_0072_1_242 | vegetarian > omnivore | 1.24802 | 0.00609 |
| HRGMv2_0072_1_243 | vegetarian > omnivore | 1.04345 | 0.00609 |
| HRGMv2_0072_1_244 | vegan > omnivore | 1.49293 | 0.00565 |
| HRGMv2_0072_1_244 | vegetarian > omnivore | 1.61149 | 0.00609 |
| HRGMv2_0072_1_245 | vegetarian > omnivore | 1.10605 | 0.00609 |
| HRGMv2_0072_1_246 | vegetarian > omnivore | 1.39691 | 0.00609 |
| HRGMv2_0072_1_247 | vegetarian > omnivore | 2.40032 | 0.00609 |
| HRGMv2_0072_1_247 | vegetarian > vegan | 5.65484 | 0.03182 |