Cluster: HRGMv2_0072_CGC24
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0072
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0072_5 | HRGMv2_0072_5_26 | 37278 | 38615 | - | CE9 |
| sulfatase | HRGMv2_0072_5 | HRGMv2_0072_5_27 | 38746 | 39558 | - | S1_9 |
| CAZyme | HRGMv2_0072_5 | HRGMv2_0072_5_28 | 39629 | 41629 | - | GH20 |
| pfam | HRGMv2_0072_5 | HRGMv2_0072_5_29 | 41709 | 42650 | - | ROK |
| TC | HRGMv2_0072_5 | HRGMv2_0072_5_30 | 42759 | 42971 | - | 3.A.1.1.48 |
| CAZyme | HRGMv2_0072_5 | HRGMv2_0072_5_31 | 43430 | 45253 | - | GH13_31 |
| TF | HRGMv2_0072_5 | HRGMv2_0072_5_32 | 45285 | 46298 | - | LacI |
| TC | HRGMv2_0072_5 | HRGMv2_0072_5_33 | 46307 | 47647 | - | 3.A.1.1.44 |
| TC | HRGMv2_0072_5 | HRGMv2_0072_5_34 | 48513 | 49442 | + | 3.A.1.1.48 |
| TC | HRGMv2_0072_5 | HRGMv2_0072_5_35 | 49501 | 50505 | + | 3.A.1.1.48 |
Gene ID: HRGMv2_0072_5_26
Type: CAZyme
Location: 37278 - 38615 (-)
Type: CAZyme
Location: 37278 - 38615 (-)
Gene ID: HRGMv2_0072_5_27
Type: sulfatase
Location: 38746 - 39558 (-)
Type: sulfatase
Location: 38746 - 39558 (-)
Gene ID: HRGMv2_0072_5_28
Type: CAZyme
Location: 39629 - 41629 (-)
Type: CAZyme
Location: 39629 - 41629 (-)
Gene ID: HRGMv2_0072_5_29
Type: pfam
Location: 41709 - 42650 (-)
Type: pfam
Location: 41709 - 42650 (-)
Gene ID: HRGMv2_0072_5_30
Type: TC
Location: 42759 - 42971 (-)
Type: TC
Location: 42759 - 42971 (-)
Gene ID: HRGMv2_0072_5_31
Type: CAZyme
Location: 43430 - 45253 (-)
Type: CAZyme
Location: 43430 - 45253 (-)
Gene ID: HRGMv2_0072_5_32
Type: TF
Location: 45285 - 46298 (-)
Type: TF
Location: 45285 - 46298 (-)
Gene ID: HRGMv2_0072_5_33
Type: TC
Location: 46307 - 47647 (-)
Type: TC
Location: 46307 - 47647 (-)
Gene ID: HRGMv2_0072_5_34
Type: TC
Location: 48513 - 49442 (+)
Type: TC
Location: 48513 - 49442 (+)
Gene ID: HRGMv2_0072_5_35
Type: TC
Location: 49501 - 50505 (+)
Type: TC
Location: 49501 - 50505 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium sp002742445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0072_5_26 | vegan > omnivore | 1.09200 | 0.00565 |
| HRGMv2_0072_5_26 | vegetarian > omnivore | 1.21419 | 0.00609 |
| HRGMv2_0072_5_27 | vegan > omnivore | 1.02692 | 0.00565 |
| HRGMv2_0072_5_28 | vegan > omnivore | 1.88320 | 0.00565 |
| HRGMv2_0072_5_29 | vegan > omnivore | 15.97152 | 0.00565 |
| HRGMv2_0072_5_29 | vegetarian > omnivore | 13.72248 | 0.00609 |
| HRGMv2_0072_5_32 | vegetarian > omnivore | 1.92063 | 0.00609 |
| HRGMv2_0072_5_33 | vegetarian > omnivore | 2.09071 | 0.00609 |
| HRGMv2_0072_5_33 | vegetarian > vegan | 1.24345 | 0.03164 |
| HRGMv2_0072_5_34 | vegetarian > omnivore | 1.02120 | 0.00609 |