Cluster: HRGMv2_0072_CGC22
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0072
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0072_5 | HRGMv2_0072_5_3 | 4292 | 5461 | + | 3.A.1.122.13 |
| STP | HRGMv2_0072_5 | HRGMv2_0072_5_4 | 5580 | 6371 | - | HD |
| peptidase | HRGMv2_0072_5 | HRGMv2_0072_5_5 | 6508 | 7392 | - | C44.UPW |
| TC | HRGMv2_0072_5 | HRGMv2_0072_5_6 | 7594 | 9771 | - | 2.A.72.1.3 |
| pfam | HRGMv2_0072_5 | HRGMv2_0072_5_7 | 9995 | 10951 | - | TatD_DNase |
| CAZyme | HRGMv2_0072_5 | HRGMv2_0072_5_8 | 11073 | 13433 | - | GH51_2 |
| CAZyme | HRGMv2_0072_5 | HRGMv2_0072_5_9 | 13527 | 14948 | - | GH27 |
| TF | HRGMv2_0072_5 | HRGMv2_0072_5_10 | 15192 | 16424 | + | LacI |
| CAZyme | HRGMv2_0072_5 | HRGMv2_0072_5_11 | 16511 | 18961 | - | GH36 |
| NULL(UNKNOWN) | HRGMv2_0072_5 | HRGMv2_0072_5_12 | 19196 | 19918 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0072_5 | HRGMv2_0072_5_13 | 20113 | 21900 | - | 3.A.1.106.3 |
| TC | HRGMv2_0072_5 | HRGMv2_0072_5_14 | 21931 | 23862 | - | 3.A.1.106.3 |
Gene ID: HRGMv2_0072_5_3
Type: TC
Location: 4292 - 5461 (+)
Type: TC
Location: 4292 - 5461 (+)
Gene ID: HRGMv2_0072_5_4
Type: STP
Location: 5580 - 6371 (-)
Type: STP
Location: 5580 - 6371 (-)
Gene ID: HRGMv2_0072_5_5
Type: peptidase
Location: 6508 - 7392 (-)
Type: peptidase
Location: 6508 - 7392 (-)
Gene ID: HRGMv2_0072_5_6
Type: TC
Location: 7594 - 9771 (-)
Type: TC
Location: 7594 - 9771 (-)
Gene ID: HRGMv2_0072_5_7
Type: pfam
Location: 9995 - 10951 (-)
Type: pfam
Location: 9995 - 10951 (-)
Gene ID: HRGMv2_0072_5_8
Type: CAZyme
Location: 11073 - 13433 (-)
Type: CAZyme
Location: 11073 - 13433 (-)
Gene ID: HRGMv2_0072_5_9
Type: CAZyme
Location: 13527 - 14948 (-)
Type: CAZyme
Location: 13527 - 14948 (-)
Gene ID: HRGMv2_0072_5_10
Type: TF
Location: 15192 - 16424 (+)
Type: TF
Location: 15192 - 16424 (+)
Gene ID: HRGMv2_0072_5_11
Type: CAZyme
Location: 16511 - 18961 (-)
Type: CAZyme
Location: 16511 - 18961 (-)
Gene ID: HRGMv2_0072_5_12
Type:
Location: 19196 - 19918 (-)
Type:
Location: 19196 - 19918 (-)
Gene ID: HRGMv2_0072_5_13
Type: TC
Location: 20113 - 21900 (-)
Type: TC
Location: 20113 - 21900 (-)
Gene ID: HRGMv2_0072_5_14
Type: TC
Location: 21931 - 23862 (-)
Type: TC
Location: 21931 - 23862 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium sp002742445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0072_5_9 | vegan > omnivore | 1.08838 | 0.00565 |
| HRGMv2_0072_5_12 | vegan > omnivore | 1.69951 | 0.00565 |