Cluster: HRGMv2_0072_CGC19
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0072
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0072_3 | HRGMv2_0072_3_124 | 156112 | 157389 | - | 3.A.1.103.5 |
| TC | HRGMv2_0072_3 | HRGMv2_0072_3_125 | 157389 | 158225 | - | 3.A.1.103.1 |
| CAZyme | HRGMv2_0072_3 | HRGMv2_0072_3_126 | 158385 | 160256 | - | GT2 |
Gene ID: HRGMv2_0072_3_124
Type: TC
Location: 156112 - 157389 (-)
Type: TC
Location: 156112 - 157389 (-)
Gene ID: HRGMv2_0072_3_125
Type: TC
Location: 157389 - 158225 (-)
Type: TC
Location: 157389 - 158225 (-)
Gene ID: HRGMv2_0072_3_126
Type: CAZyme
Location: 158385 - 160256 (-)
Type: CAZyme
Location: 158385 - 160256 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium sp002742445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0072_3_126 | vegan > omnivore | 2.50548 | 0.00565 |
| HRGMv2_0072_3_126 | vegetarian > omnivore | 2.75959 | 0.00609 |