Cluster: HRGMv2_0069_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0069
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0069_1 | HRGMv2_0069_1_95 | 123880 | 124875 | + | 8.A.21.2.2 |
| pfam | HRGMv2_0069_1 | HRGMv2_0069_1_96 | 125064 | 125402 | + | RbpA |
| CAZyme | HRGMv2_0069_1 | HRGMv2_0069_1_97 | 125680 | 126414 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_0069_1 | HRGMv2_0069_1_98 | 126539 | 127717 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0069_1 | HRGMv2_0069_1_99 | 127933 | 130971 | - | DEAD | Helicase_C | ResIII | DSHCT |
| TC | HRGMv2_0069_1 | HRGMv2_0069_1_100 | 131159 | 132040 | - | 2.A.64.2.2 |
Gene ID: HRGMv2_0069_1_95
Type: TC
Location: 123880 - 124875 (+)
Type: TC
Location: 123880 - 124875 (+)
Gene ID: HRGMv2_0069_1_96
Type: pfam
Location: 125064 - 125402 (+)
Type: pfam
Location: 125064 - 125402 (+)
Gene ID: HRGMv2_0069_1_97
Type: CAZyme
Location: 125680 - 126414 (-)
Type: CAZyme
Location: 125680 - 126414 (-)
Gene ID: HRGMv2_0069_1_98
Type:
Location: 126539 - 127717 (-)
Type:
Location: 126539 - 127717 (-)
Gene ID: HRGMv2_0069_1_99
Type: pfam
Location: 127933 - 130971 (-)
Type: pfam
Location: 127933 - 130971 (-)
Gene ID: HRGMv2_0069_1_100
Type: TC
Location: 131159 - 132040 (-)
Type: TC
Location: 131159 - 132040 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Micrococcaceae
Genus
Rothia
Species
Rothia mucilaginosa_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.