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Cluster: HRGMv2_0014_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0014_1 HRGMv2_0014_1_98 82226 83890 - 9.B.34.1.4
STP HRGMv2_0014_1 HRGMv2_0014_1_99 84151 85821 - GGDEF | dCache_1
pfam HRGMv2_0014_1 HRGMv2_0014_1_100 86206 87501 + UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
CAZyme HRGMv2_0014_1 HRGMv2_0014_1_101 87503 88393 + CE4
NULL(UNKNOWN) HRGMv2_0014_1 HRGMv2_0014_1_102 88417 89706 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0014_1 HRGMv2_0014_1_103 89734 91668 + CE4
CAZyme HRGMv2_0014_1 HRGMv2_0014_1_104 91672 93564 + GT2
NULL(UNKNOWN) HRGMv2_0014_1 HRGMv2_0014_1_105 93551 95434 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0014_1 HRGMv2_0014_1_106 95439 96518 + GH18
Gene ID: HRGMv2_0014_1_98
Type: TC
Location: 82226 - 83890 (-)
Gene ID: HRGMv2_0014_1_99
Type: STP
Location: 84151 - 85821 (-)
Gene ID: HRGMv2_0014_1_100
Type: pfam
Location: 86206 - 87501 (+)
Gene ID: HRGMv2_0014_1_101
Type: CAZyme
Location: 87503 - 88393 (+)
Gene ID: HRGMv2_0014_1_102
Type:
Location: 88417 - 89706 (+)
Gene ID: HRGMv2_0014_1_103
Type: CAZyme
Location: 89734 - 91668 (+)
Gene ID: HRGMv2_0014_1_104
Type: CAZyme
Location: 91672 - 93564 (+)
Gene ID: HRGMv2_0014_1_105
Type:
Location: 93551 - 95434 (+)
Gene ID: HRGMv2_0014_1_106
Type: CAZyme
Location: 95439 - 96518 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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