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Cluster: GibsonMK_2016_SRR3131894_bin.2_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC GibsonMK_2016_SRR3131894_bin.2_k141_880 GibsonMK_2016_SRR3131894_bin.2_k141_880_1 2 865 + 9.B.18.1.2
CAZyme GibsonMK_2016_SRR3131894_bin.2_k141_880 GibsonMK_2016_SRR3131894_bin.2_k141_880_2 896 2068 + GT4
CAZyme GibsonMK_2016_SRR3131894_bin.2_k141_880 GibsonMK_2016_SRR3131894_bin.2_k141_880_3 2072 3223 + GT4
NULL(UNKNOWN) GibsonMK_2016_SRR3131894_bin.2_k141_880 GibsonMK_2016_SRR3131894_bin.2_k141_880_4 3232 4233 + NULL(UNKNOWN)
[View Structural Homologs]
pfam GibsonMK_2016_SRR3131894_bin.2_k141_880 GibsonMK_2016_SRR3131894_bin.2_k141_880_5 4248 5249 + Stealth_CR2 | Stealth_CR1 | Stealth_CR3
CAZyme GibsonMK_2016_SRR3131894_bin.2_k141_880 GibsonMK_2016_SRR3131894_bin.2_k141_880_6 5283 6245 + GT2
Gene ID: GibsonMK_2016_SRR3131894_bin.2_k141_880_1
Type: TC
Location: 2 - 865 (+)
Gene ID: GibsonMK_2016_SRR3131894_bin.2_k141_880_2
Type: CAZyme
Location: 896 - 2068 (+)
Gene ID: GibsonMK_2016_SRR3131894_bin.2_k141_880_3
Type: CAZyme
Location: 2072 - 3223 (+)
Gene ID: GibsonMK_2016_SRR3131894_bin.2_k141_880_4
Type:
Location: 3232 - 4233 (+)
Gene ID: GibsonMK_2016_SRR3131894_bin.2_k141_880_5
Type: pfam
Location: 4248 - 5249 (+)
Gene ID: GibsonMK_2016_SRR3131894_bin.2_k141_880_6
Type: CAZyme
Location: 5283 - 6245 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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