PROTEIN: GibsonMK_2016_SRR3131894_bin.2_k141_880_4
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Protein File & Metadata
Source:
GibsonMK_2016_SRR3131894_bin.2_k141_880_4.pdb
Genome ID:
Protein ID:
GibsonMK_2016_SRR3131894_bin.2_k141_880_4
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Protein Sequence
MENLIILDSE LQKKNEEYYQ SLHGGSRVVY TNYESPLIRR VRNFKYIGSA LYHFLMWKMS 60 YDYARKFIKY DVKKIICVNP LVGIFLGILN KSGKEITLAG FLFENKKNKI YYYLRKQLVK 120 KSFQNISNII VYGSKEIHYY SELFPEFQEK FKFIHYGLDY DNQLTYQGSL PTKYIFSGGG 180 SNRDYETLVK AVETSTLSMP CVIATQPWRV PTHGSNIQVL SDVVVETFGD VLAKSDFLVL 240 SLKDIDLSAG HMVMLQAMSL GVPIIVNDIP SVRDYVDESL VTFYPSGDFE ALAQLMEHFN 300 PMVDDIIQKV DKAKALYFEQ YTSIKLMDRL LNF 333
Protein Structure Viewer
Confidence Score (pLDDT)
Very Low (<50)
Low (50-70)
High (70-90)
Very High (>90)
Low Confidence
High Confidence
Structural Homologs -
AFDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-K0EV23-F1-model_v4 | 2 | 333 | 1 | 332 | 0.7288 |
0.7622 |
| AF-Q59002-F1-model_v4 | 2 | 333 | 1 | 380 | 0.7267 |
0.8061 |
| AF-A0A1A7SPW8-F1-model_v4 | 1 | 333 | 4 | 373 | 0.7244 |
0.7932 |
| AF-K0EWM5-F1-model_v4 | 2 | 333 | 1 | 332 | 0.7234 |
0.7563 |
| AF-K0EV99-F1-model_v4 | 5 | 333 | 1 | 350 | 0.7219 |
0.776 |
| AF-K0EZX0-F1-model_v4 | 1 | 333 | 6 | 360 | 0.719 |
0.7743 |
| AF-Q9HTB9-F1-model_v4 | 2 | 333 | 1 | 368 | 0.7184 |
0.7841 |
| AF-P9WMZ1-F1-model_v4 | 2 | 333 | 1 | 381 | 0.7167 |
0.7935 |
| AF-Q9I1N0-F1-model_v4 | 1 | 333 | 1 | 362 | 0.715 |
0.7724 |
| AF-X8F0S0-F1-model_v4 | 1 | 333 | 2 | 342 | 0.7083 |
0.7522 |
Structural Homologs -
CAZyme3D-Whole
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| R5JPB5 | GT4 | 1 | 333 | 18 | 348 | 0.8145 |
0.8592 |
| A0A1C7I871 | GT4 | 1 | 333 | 3 | 332 | 0.8102 |
0.8402 |
| AF-A0A1C7I871-F1-model_v4 | GT4 | 1 | 333 | 3 | 332 | 0.8102 |
0.8402 |
| WFS25211.1 | GT4 | 1 | 333 | 1 | 331 | 0.809 |
0.8388 |
| AF-A0A7T5E548-F1-model_v4 | GT4 | 1 | 333 | 1 | 335 | 0.8071 |
0.8377 |
| AF-Q1GJ84-F1-model_v4 | GT4 | 1 | 333 | 1 | 328 | 0.8067 |
0.8447 |
| AF-K9UX29-F1-model_v4 | GT4 | 1 | 333 | 1 | 334 | 0.8054 |
0.8391 |
| AF-A0A1Z4NGL2-F1-model_v4 | GT4 | 1 | 333 | 1 | 335 | 0.8031 |
0.8405 |
| WDI30737.1 | GT4 | 1 | 333 | 6 | 333 | 0.8013 |
0.8429 |
| AF-A0A856MFD8-F1-model_v4 | GT4 | 1 | 333 | 1 | 335 | 0.7997 |
0.8353 |
Structural Homologs -
CAZyme-ID50
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| R5JPB5 | GT4 | 1 | 333 | 18 | 348 | 0.8145 |
0.8592 |
| A0A1C7I871 | GT4 | 1 | 333 | 3 | 332 | 0.8102 |
0.8402 |
| WFS25211.1 | GT4 | 1 | 333 | 1 | 331 | 0.809 |
0.8388 |
| Q1GJ84 | GT4 | 1 | 333 | 1 | 328 | 0.8067 |
0.8447 |
| WDI30737.1 | GT4 | 1 | 333 | 6 | 333 | 0.8013 |
0.8429 |
| A0A1I7LW09 | GT4 | 1 | 333 | 1 | 331 | 0.7995 |
0.8314 |
| A0A255SXN7 | GT4 | 1 | 333 | 14 | 339 | 0.7988 |
0.8467 |
| A0A250JGQ2 | GT4 | 1 | 333 | 14 | 347 | 0.7973 |
0.8477 |
| WCR08092.1 | GT4 | 1 | 333 | 5 | 329 | 0.7958 |
0.8533 |
| A0A9E8Z8Y6 | GT4 | 1 | 333 | 1 | 331 | 0.7957 |
0.8421 |
Structural Homologs -
PDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| 3mbo-assembly4.cif.gz_H | 1 | 333 | 1 | 361 | 0.7239 |
0.7818 |
| 3mbo-assembly3.cif.gz_F | 1 | 333 | 1 | 361 | 0.7236 |
0.7811 |
| 3mbo-assembly1.cif.gz_B | 1 | 333 | 1 | 361 | 0.7236 |
0.7816 |
| 6tvp-assembly1.cif.gz_A | 1 | 333 | 2 | 380 | 0.723 |
0.7954 |
| 3mbo-assembly1.cif.gz_A | 1 | 333 | 1 | 364 | 0.7206 |
0.7804 |
| 2jjm-assembly1.cif.gz_B | 1 | 333 | 1 | 354 | 0.7199 |
0.769 |
| 3mbo-assembly4.cif.gz_G | 1 | 333 | 1 | 357 | 0.7192 |
0.7737 |
| 3mbo-assembly2.cif.gz_C | 1 | 333 | 1 | 365 | 0.7176 |
0.7789 |
| 3mbo-assembly3.cif.gz_E | 1 | 333 | 1 | 367 | 0.7169 |
0.7797 |
| 6n1x-assembly1.cif.gz_A | 1 | 333 | 2 | 370 | 0.71 |
0.7743 |
Structural Homologs -
SwissProt
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-Q59002-F1-model_v4 | 2 | 333 | 1 | 380 | 0.7267 |
0.8061 |
| AF-P54490-F1-model_v4 | 2 | 333 | 1 | 348 | 0.7264 |
0.781 |
| AF-D4GU66-F1-model_v4 | 7 | 333 | 8 | 367 | 0.7205 |
0.7961 |
| AF-Q65CC7-F1-model_v4 | 6 | 333 | 2 | 380 | 0.7165 |
0.8021 |
| AF-P42982-F1-model_v4 | 1 | 333 | 2 | 369 | 0.7025 |
0.7667 |
| AF-Q81ST7-F1-model_v4 | 1 | 333 | 1 | 368 | 0.699 |
0.7665 |
| AF-Q0P9C7-F1-model_v4 | 1 | 333 | 1 | 362 | 0.6979 |
0.7557 |
| AF-P9WMY9-F1-model_v4 | 1 | 333 | 1 | 389 | 0.6976 |
0.7914 |
| AF-P9WMY8-F1-model_v4 | 1 | 333 | 1 | 389 | 0.6953 |
0.7891 |
| AF-Q9R9N0-F1-model_v4 | 2 | 333 | 1 | 335 | 0.6952 |
0.73 |