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Cluster: GasparriniAJ_2019_SRR9865738_bin.1_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC GasparriniAJ_2019_SRR9865738_bin.1_k141_3538 GasparriniAJ_2019_SRR9865738_bin.1_k141_3538_57 59280 60581 - 2.A.26.1.2
TC GasparriniAJ_2019_SRR9865738_bin.1_k141_3538 GasparriniAJ_2019_SRR9865738_bin.1_k141_3538_58 60792 61979 + 2.A.33.1.2
CAZyme GasparriniAJ_2019_SRR9865738_bin.1_k141_3538 GasparriniAJ_2019_SRR9865738_bin.1_k141_3538_59 61988 63529 + GT2
NULL(UNKNOWN) GasparriniAJ_2019_SRR9865738_bin.1_k141_3538 GasparriniAJ_2019_SRR9865738_bin.1_k141_3538_60 63670 64911 - NULL(UNKNOWN)
[View Structural Homologs]
pfam GasparriniAJ_2019_SRR9865738_bin.1_k141_3538 GasparriniAJ_2019_SRR9865738_bin.1_k141_3538_61 64969 66108 - DUF2827
TC GasparriniAJ_2019_SRR9865738_bin.1_k141_3538 GasparriniAJ_2019_SRR9865738_bin.1_k141_3538_62 66240 67016 - 1.B.40.1.5
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_3538_57
Type: TC
Location: 59280 - 60581 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_3538_58
Type: TC
Location: 60792 - 61979 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_3538_59
Type: CAZyme
Location: 61988 - 63529 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_3538_60
Type:
Location: 63670 - 64911 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_3538_61
Type: pfam
Location: 64969 - 66108 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_3538_62
Type: TC
Location: 66240 - 67016 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
GasparriniAJ_2019_SRR9865738_bin.1_k141_3538_62 vegetarian > vegan 1.61697 0.03045

🧭 Explore Read Mapping of CGC

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