Cluster: GasparriniAJ_2019_SRR9865541_bin.10_CGC18
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865541_bin.10
- CGC Family ID: CGCFAM_09224
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | GasparriniAJ_2019_SRR9865541_bin.10_k141_34683 | GasparriniAJ_2019_SRR9865541_bin.10_k141_34683_13 | 14769 | 16505 | - | 3.A.1.135.5 |
| TC | GasparriniAJ_2019_SRR9865541_bin.10_k141_34683 | GasparriniAJ_2019_SRR9865541_bin.10_k141_34683_14 | 16495 | 18213 | - | 3.A.1.135.5 |
| NULL(UNKNOWN) | GasparriniAJ_2019_SRR9865541_bin.10_k141_34683 | GasparriniAJ_2019_SRR9865541_bin.10_k141_34683_15 | 18288 | 19223 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | GasparriniAJ_2019_SRR9865541_bin.10_k141_34683 | GasparriniAJ_2019_SRR9865541_bin.10_k141_34683_16 | 19288 | 20445 | + | 9.B.67.1.2 |
| NULL(UNKNOWN) | GasparriniAJ_2019_SRR9865541_bin.10_k141_34683 | GasparriniAJ_2019_SRR9865541_bin.10_k141_34683_17 | 20478 | 20651 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | GasparriniAJ_2019_SRR9865541_bin.10_k141_34683 | GasparriniAJ_2019_SRR9865541_bin.10_k141_34683_18 | 20721 | 20894 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | GasparriniAJ_2019_SRR9865541_bin.10_k141_34683 | GasparriniAJ_2019_SRR9865541_bin.10_k141_34683_19 | 20979 | 21752 | - | 2.A.5.5.2 |
| pfam | GasparriniAJ_2019_SRR9865541_bin.10_k141_34683 | GasparriniAJ_2019_SRR9865541_bin.10_k141_34683_20 | 21820 | 22305 | - | Acetyltransf_1 | FR47 | Acetyltransf_7 | Acetyltransf_9 | Acetyltransf_10 |
| TC | GasparriniAJ_2019_SRR9865541_bin.10_k141_34683 | GasparriniAJ_2019_SRR9865541_bin.10_k141_34683_21 | 22436 | 23686 | + | 2.A.40.1.1 |
| CAZyme | GasparriniAJ_2019_SRR9865541_bin.10_k141_34683 | GasparriniAJ_2019_SRR9865541_bin.10_k141_34683_22 | 23826 | 28766 | - | GH2 |
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_34683_13
Type: TC
Location: 14769 - 16505 (-)
Type: TC
Location: 14769 - 16505 (-)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_34683_14
Type: TC
Location: 16495 - 18213 (-)
Type: TC
Location: 16495 - 18213 (-)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_34683_15
Type:
Location: 18288 - 19223 (-)
Type:
Location: 18288 - 19223 (-)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_34683_16
Type: TC
Location: 19288 - 20445 (+)
Type: TC
Location: 19288 - 20445 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_34683_17
Type:
Location: 20478 - 20651 (-)
Type:
Location: 20478 - 20651 (-)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_34683_18
Type:
Location: 20721 - 20894 (-)
Type:
Location: 20721 - 20894 (-)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_34683_19
Type: TC
Location: 20979 - 21752 (-)
Type: TC
Location: 20979 - 21752 (-)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_34683_20
Type: pfam
Location: 21820 - 22305 (-)
Type: pfam
Location: 21820 - 22305 (-)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_34683_21
Type: TC
Location: 22436 - 23686 (+)
Type: TC
Location: 22436 - 23686 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_34683_22
Type: CAZyme
Location: 23826 - 28766 (-)
Type: CAZyme
Location: 23826 - 28766 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia spiroformis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.