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Cluster: GasparriniAJ_2019_SRR9865541_bin.10_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC GasparriniAJ_2019_SRR9865541_bin.10_k141_27558 GasparriniAJ_2019_SRR9865541_bin.10_k141_27558_4 1554 2918 + 9.B.18.1.2
CAZyme GasparriniAJ_2019_SRR9865541_bin.10_k141_27558 GasparriniAJ_2019_SRR9865541_bin.10_k141_27558_5 2944 3813 + GT14
CAZyme GasparriniAJ_2019_SRR9865541_bin.10_k141_27558 GasparriniAJ_2019_SRR9865541_bin.10_k141_27558_6 3831 4754 + GT2
CAZyme GasparriniAJ_2019_SRR9865541_bin.10_k141_27558 GasparriniAJ_2019_SRR9865541_bin.10_k141_27558_7 4792 5463 + GT2
pfam GasparriniAJ_2019_SRR9865541_bin.10_k141_27558 GasparriniAJ_2019_SRR9865541_bin.10_k141_27558_8 5481 5828 + DUF2304
CAZyme GasparriniAJ_2019_SRR9865541_bin.10_k141_27558 GasparriniAJ_2019_SRR9865541_bin.10_k141_27558_9 5831 6823 + GT2
TC GasparriniAJ_2019_SRR9865541_bin.10_k141_27558 GasparriniAJ_2019_SRR9865541_bin.10_k141_27558_10 6825 8243 + 2.A.66.2.16
CAZyme GasparriniAJ_2019_SRR9865541_bin.10_k141_27558 GasparriniAJ_2019_SRR9865541_bin.10_k141_27558_11 8243 9367 + GT4
NULL(UNKNOWN) GasparriniAJ_2019_SRR9865541_bin.10_k141_27558 GasparriniAJ_2019_SRR9865541_bin.10_k141_27558_12 9963 11888 + NULL(UNKNOWN)
[View Structural Homologs]
TC GasparriniAJ_2019_SRR9865541_bin.10_k141_27558 GasparriniAJ_2019_SRR9865541_bin.10_k141_27558_13 12762 13892 + 3.A.1.103.4
TC GasparriniAJ_2019_SRR9865541_bin.10_k141_27558 GasparriniAJ_2019_SRR9865541_bin.10_k141_27558_14 13903 14676 + 3.A.1.103.4
CAZyme GasparriniAJ_2019_SRR9865541_bin.10_k141_27558 GasparriniAJ_2019_SRR9865541_bin.10_k141_27558_15 14693 16855 + GT2 | GT2
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_27558_4
Type: TC
Location: 1554 - 2918 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_27558_5
Type: CAZyme
Location: 2944 - 3813 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_27558_6
Type: CAZyme
Location: 3831 - 4754 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_27558_7
Type: CAZyme
Location: 4792 - 5463 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_27558_8
Type: pfam
Location: 5481 - 5828 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_27558_9
Type: CAZyme
Location: 5831 - 6823 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_27558_10
Type: TC
Location: 6825 - 8243 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_27558_11
Type: CAZyme
Location: 8243 - 9367 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_27558_12
Type:
Location: 9963 - 11888 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_27558_13
Type: TC
Location: 12762 - 13892 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_27558_14
Type: TC
Location: 13903 - 14676 (+)
Gene ID: GasparriniAJ_2019_SRR9865541_bin.10_k141_27558_15
Type: CAZyme
Location: 14693 - 16855 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
GasparriniAJ_2019_SRR9865541_bin.10_k141_27558_14 vegan > omnivore 2.32420 0.00358

🧭 Explore Read Mapping of CGC

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