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Cluster: GH021_63_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_115013 k141_115013_11 10356 12770 - GH3
CAZyme k141_115013 k141_115013_12 13011 16082 - GH3
CAZyme k141_115013 k141_115013_13 16288 19161 - GH3
pfam k141_115013 k141_115013_14 19385 20668 - HATPase_c_5
TF k141_115013 k141_115013_15 20665 21375 - LytTR
TC k141_115013 k141_115013_16 21452 22795 - 2.A.66.1.33
STP k141_115013 k141_115013_17 23076 26300 + HATPase_c | HisKA | Response_reg | Response_reg
TC k141_115013 k141_115013_18 26607 28322 + 1.A.11.2.7
Gene ID: k141_115013_11
Type: CAZyme
Location: 10356 - 12770 (-)
Gene ID: k141_115013_12
Type: CAZyme
Location: 13011 - 16082 (-)
Gene ID: k141_115013_13
Type: CAZyme
Location: 16288 - 19161 (-)
Gene ID: k141_115013_14
Type: pfam
Location: 19385 - 20668 (-)
Gene ID: k141_115013_15
Type: TF
Location: 20665 - 21375 (-)
Gene ID: k141_115013_16
Type: TC
Location: 21452 - 22795 (-)
Gene ID: k141_115013_17
Type: STP
Location: 23076 - 26300 (+)
Gene ID: k141_115013_18
Type: TC
Location: 26607 - 28322 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_115013_13 vegan > omnivore 2.61207 0.03476

🧭 Explore Read Mapping of CGC

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