Cluster: GH021_63_CGC16
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: GH021_63
- CGC Family ID: CGCFAM_02422
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_38815 | k141_38815_10 | 11429 | 13081 | + | 3.A.1.1.29 |
| CAZyme | k141_38815 | k141_38815_11 | 13362 | 15374 | + | PL12 |
| pfam | k141_38815 | k141_38815_12 | 15391 | 16170 | + | AP_endonuc_2 |
| CAZyme | k141_38815 | k141_38815_13 | 16163 | 17287 | + | GH177 |
| TF | k141_38815 | k141_38815_14 | 17335 | 19686 | + | HTH_AraC |
| CAZyme | k141_38815 | k141_38815_15 | 19673 | 20707 | + | GH179 |
| TC | k141_38815 | k141_38815_16 | 20704 | 21681 | + | 3.A.1.1.10 |
| TC | k141_38815 | k141_38815_17 | 21695 | 22600 | + | 3.A.1.1.10 |
Gene ID: k141_38815_10
Type: TC
Location: 11429 - 13081 (+)
Type: TC
Location: 11429 - 13081 (+)
Gene ID: k141_38815_11
Type: CAZyme
Location: 13362 - 15374 (+)
Type: CAZyme
Location: 13362 - 15374 (+)
Gene ID: k141_38815_12
Type: pfam
Location: 15391 - 16170 (+)
Type: pfam
Location: 15391 - 16170 (+)
Gene ID: k141_38815_13
Type: CAZyme
Location: 16163 - 17287 (+)
Type: CAZyme
Location: 16163 - 17287 (+)
Gene ID: k141_38815_14
Type: TF
Location: 17335 - 19686 (+)
Type: TF
Location: 17335 - 19686 (+)
Gene ID: k141_38815_15
Type: CAZyme
Location: 19673 - 20707 (+)
Type: CAZyme
Location: 19673 - 20707 (+)
Gene ID: k141_38815_16
Type: TC
Location: 20704 - 21681 (+)
Type: TC
Location: 20704 - 21681 (+)
Gene ID: k141_38815_17
Type: TC
Location: 21695 - 22600 (+)
Type: TC
Location: 21695 - 22600 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger variabilis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_38815_10 | vegan > omnivore | 1.86457 | 0.03476 |
| k141_38815_11 | vegan > omnivore | 1.96343 | 0.03476 |
| k141_38815_12 | vegan > omnivore | 2.13772 | 0.03476 |
| k141_38815_13 | vegan > omnivore | 1.28417 | 0.03476 |
| k141_38815_14 | vegan > omnivore | 2.31377 | 0.03476 |
| k141_38815_15 | vegan > omnivore | 2.05985 | 0.03476 |
| k141_38815_16 | vegan > omnivore | 2.38797 | 0.03476 |
| k141_38815_17 | vegan > omnivore | 2.41879 | 0.03476 |