Cluster: GH021_63_CGC1
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: GH021_63
- CGC Family ID: CGCFAM_00458
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_307239 | k141_307239_2 | 597 | 2138 | - | GH43_10 |
| CAZyme | k141_307239 | k141_307239_3 | 2151 | 3413 | - | GH28 |
| TC | k141_307239 | k141_307239_4 | 3518 | 4996 | - | 3.A.1.1.9 |
| TC | k141_307239 | k141_307239_5 | 5064 | 5939 | - | 3.A.1.1.29 |
| TC | k141_307239 | k141_307239_6 | 5941 | 6873 | - | 3.A.1.1.10 |
| TF | k141_307239 | k141_307239_7 | 7084 | 9315 | - | HTH_AraC |
| TC | k141_307239 | k141_307239_8 | 9486 | 10136 | + | 2.A.115.2.12 |
| CAZyme | k141_307239 | k141_307239_9 | 10205 | 10921 | + | CE12 |
Gene ID: k141_307239_2
Type: CAZyme
Location: 597 - 2138 (-)
Type: CAZyme
Location: 597 - 2138 (-)
Gene ID: k141_307239_3
Type: CAZyme
Location: 2151 - 3413 (-)
Type: CAZyme
Location: 2151 - 3413 (-)
Gene ID: k141_307239_4
Type: TC
Location: 3518 - 4996 (-)
Type: TC
Location: 3518 - 4996 (-)
Gene ID: k141_307239_5
Type: TC
Location: 5064 - 5939 (-)
Type: TC
Location: 5064 - 5939 (-)
Gene ID: k141_307239_6
Type: TC
Location: 5941 - 6873 (-)
Type: TC
Location: 5941 - 6873 (-)
Gene ID: k141_307239_7
Type: TF
Location: 7084 - 9315 (-)
Type: TF
Location: 7084 - 9315 (-)
Gene ID: k141_307239_8
Type: TC
Location: 9486 - 10136 (+)
Type: TC
Location: 9486 - 10136 (+)
Gene ID: k141_307239_9
Type: CAZyme
Location: 10205 - 10921 (+)
Type: CAZyme
Location: 10205 - 10921 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger variabilis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_307239_2 | vegan > omnivore | 1.30963 | 0.03476 |
| k141_307239_3 | vegan > omnivore | 1.30109 | 0.03476 |
| k141_307239_4 | vegan > omnivore | 1.31849 | 0.03476 |
| k141_307239_5 | vegan > omnivore | 1.32017 | 0.03476 |
| k141_307239_6 | vegan > omnivore | 1.30390 | 0.03476 |
| k141_307239_7 | vegan > omnivore | 1.39088 | 0.03476 |
| k141_307239_8 | vegan > omnivore | 1.28780 | 0.03476 |
| k141_307239_9 | vegan > omnivore | 1.33599 | 0.03476 |