Cluster: CokerMO_2019_SRR8692240_bin.20_CGC21
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 6
- Substrate:
- Genome ID: CokerMO_2019_SRR8692240_bin.20
- CGC Family ID: CGCFAM_04292
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | CokerMO_2019_SRR8692240_bin.20_k141_30958 | CokerMO_2019_SRR8692240_bin.20_k141_30958_3 | 1326 | 2531 | - | GT2 |
| pfam | CokerMO_2019_SRR8692240_bin.20_k141_30958 | CokerMO_2019_SRR8692240_bin.20_k141_30958_4 | 2804 | 3673 | + | NTP_transferase | NTP_transf_3 |
| pfam | CokerMO_2019_SRR8692240_bin.20_k141_30958 | CokerMO_2019_SRR8692240_bin.20_k141_30958_5 | 3711 | 4268 | + | dTDP_sugar_isom |
| TC | CokerMO_2019_SRR8692240_bin.20_k141_30958 | CokerMO_2019_SRR8692240_bin.20_k141_30958_6 | 4283 | 5059 | + | 3.A.1.103.6 |
| TC | CokerMO_2019_SRR8692240_bin.20_k141_30958 | CokerMO_2019_SRR8692240_bin.20_k141_30958_7 | 5070 | 5804 | + | 3.A.1.103.1 |
| NULL(UNKNOWN) | CokerMO_2019_SRR8692240_bin.20_k141_30958 | CokerMO_2019_SRR8692240_bin.20_k141_30958_8 | 5830 | 6435 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | CokerMO_2019_SRR8692240_bin.20_k141_30958 | CokerMO_2019_SRR8692240_bin.20_k141_30958_9 | 6455 | 8941 | + | GT2 | GT2 |
| pfam | CokerMO_2019_SRR8692240_bin.20_k141_30958 | CokerMO_2019_SRR8692240_bin.20_k141_30958_10 | 8967 | 9809 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| pfam | CokerMO_2019_SRR8692240_bin.20_k141_30958 | CokerMO_2019_SRR8692240_bin.20_k141_30958_11 | 9829 | 10407 | + | Germane |
| CAZyme | CokerMO_2019_SRR8692240_bin.20_k141_30958 | CokerMO_2019_SRR8692240_bin.20_k141_30958_12 | 10424 | 12265 | + | GT2 | GT2 |
| CAZyme | CokerMO_2019_SRR8692240_bin.20_k141_30958 | CokerMO_2019_SRR8692240_bin.20_k141_30958_13 | 12269 | 13228 | + | GT2 |
| pfam | CokerMO_2019_SRR8692240_bin.20_k141_30958 | CokerMO_2019_SRR8692240_bin.20_k141_30958_14 | 13241 | 14341 | + | PS_pyruv_trans |
| CAZyme | CokerMO_2019_SRR8692240_bin.20_k141_30958 | CokerMO_2019_SRR8692240_bin.20_k141_30958_15 | 14360 | 16405 | + | GH73 |
| STP | CokerMO_2019_SRR8692240_bin.20_k141_30958 | CokerMO_2019_SRR8692240_bin.20_k141_30958_16 | 16555 | 17070 | + | Sigma70_r2 | Sigma70_r4_2 |
| pfam | CokerMO_2019_SRR8692240_bin.20_k141_30958 | CokerMO_2019_SRR8692240_bin.20_k141_30958_17 | 17076 | 18596 | + | DUF4367 |
| TC | CokerMO_2019_SRR8692240_bin.20_k141_30958 | CokerMO_2019_SRR8692240_bin.20_k141_30958_18 | 18878 | 20239 | + | 9.B.18.1.1 |
| pfam | CokerMO_2019_SRR8692240_bin.20_k141_30958 | CokerMO_2019_SRR8692240_bin.20_k141_30958_19 | 20253 | 21563 | + | LytR_cpsA_psr |
| CAZyme | CokerMO_2019_SRR8692240_bin.20_k141_30958 | CokerMO_2019_SRR8692240_bin.20_k141_30958_20 | 21603 | 22547 | + | GT2 |
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_30958_3
Type: CAZyme
Location: 1326 - 2531 (-)
Type: CAZyme
Location: 1326 - 2531 (-)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_30958_4
Type: pfam
Location: 2804 - 3673 (+)
Type: pfam
Location: 2804 - 3673 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_30958_5
Type: pfam
Location: 3711 - 4268 (+)
Type: pfam
Location: 3711 - 4268 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_30958_6
Type: TC
Location: 4283 - 5059 (+)
Type: TC
Location: 4283 - 5059 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_30958_7
Type: TC
Location: 5070 - 5804 (+)
Type: TC
Location: 5070 - 5804 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_30958_8
Type:
Location: 5830 - 6435 (+)
Type:
Location: 5830 - 6435 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_30958_9
Type: CAZyme
Location: 6455 - 8941 (+)
Type: CAZyme
Location: 6455 - 8941 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_30958_10
Type: pfam
Location: 8967 - 9809 (+)
Type: pfam
Location: 8967 - 9809 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_30958_11
Type: pfam
Location: 9829 - 10407 (+)
Type: pfam
Location: 9829 - 10407 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_30958_12
Type: CAZyme
Location: 10424 - 12265 (+)
Type: CAZyme
Location: 10424 - 12265 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_30958_13
Type: CAZyme
Location: 12269 - 13228 (+)
Type: CAZyme
Location: 12269 - 13228 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_30958_14
Type: pfam
Location: 13241 - 14341 (+)
Type: pfam
Location: 13241 - 14341 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_30958_15
Type: CAZyme
Location: 14360 - 16405 (+)
Type: CAZyme
Location: 14360 - 16405 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_30958_16
Type: STP
Location: 16555 - 17070 (+)
Type: STP
Location: 16555 - 17070 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_30958_17
Type: pfam
Location: 17076 - 18596 (+)
Type: pfam
Location: 17076 - 18596 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_30958_18
Type: TC
Location: 18878 - 20239 (+)
Type: TC
Location: 18878 - 20239 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_30958_19
Type: pfam
Location: 20253 - 21563 (+)
Type: pfam
Location: 20253 - 21563 (+)
Gene ID: CokerMO_2019_SRR8692240_bin.20_k141_30958_20
Type: CAZyme
Location: 21603 - 22547 (+)
Type: CAZyme
Location: 21603 - 22547 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Faecalimonas
Species
Faecalimonas sp900546325
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.