Cluster: CokerMO_2019_SRR8692236_bin.2_CGC7
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: CokerMO_2019_SRR8692236_bin.2
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | CokerMO_2019_SRR8692236_bin.2_k141_5690 | CokerMO_2019_SRR8692236_bin.2_k141_5690_101 | 128803 | 131049 | - | GT2 |
| pfam | CokerMO_2019_SRR8692236_bin.2_k141_5690 | CokerMO_2019_SRR8692236_bin.2_k141_5690_102 | 131062 | 132132 | - | Glycos_transf_2 | GtrA_DPMS_TM |
| TC | CokerMO_2019_SRR8692236_bin.2_k141_5690 | CokerMO_2019_SRR8692236_bin.2_k141_5690_103 | 132267 | 134594 | - | 9.A.8.1.6 |
| TC | CokerMO_2019_SRR8692236_bin.2_k141_5690 | CokerMO_2019_SRR8692236_bin.2_k141_5690_104 | 134718 | 134939 | - | 9.A.8.1.6 |
| STP | CokerMO_2019_SRR8692236_bin.2_k141_5690 | CokerMO_2019_SRR8692236_bin.2_k141_5690_105 | 134980 | 135222 | - | FeoA |
| STP | CokerMO_2019_SRR8692236_bin.2_k141_5690 | CokerMO_2019_SRR8692236_bin.2_k141_5690_106 | 135460 | 135708 | - | PTS-HPr |
| TC | CokerMO_2019_SRR8692236_bin.2_k141_5690 | CokerMO_2019_SRR8692236_bin.2_k141_5690_107 | 136130 | 137593 | - | 2.A.3.7.4 |
| NULL(UNKNOWN) | CokerMO_2019_SRR8692236_bin.2_k141_5690 | CokerMO_2019_SRR8692236_bin.2_k141_5690_108 | 137747 | 138202 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | CokerMO_2019_SRR8692236_bin.2_k141_5690 | CokerMO_2019_SRR8692236_bin.2_k141_5690_109 | 138206 | 141214 | - | GH2 |
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_5690_101
Type: CAZyme
Location: 128803 - 131049 (-)
Type: CAZyme
Location: 128803 - 131049 (-)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_5690_102
Type: pfam
Location: 131062 - 132132 (-)
Type: pfam
Location: 131062 - 132132 (-)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_5690_103
Type: TC
Location: 132267 - 134594 (-)
Type: TC
Location: 132267 - 134594 (-)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_5690_104
Type: TC
Location: 134718 - 134939 (-)
Type: TC
Location: 134718 - 134939 (-)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_5690_105
Type: STP
Location: 134980 - 135222 (-)
Type: STP
Location: 134980 - 135222 (-)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_5690_106
Type: STP
Location: 135460 - 135708 (-)
Type: STP
Location: 135460 - 135708 (-)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_5690_107
Type: TC
Location: 136130 - 137593 (-)
Type: TC
Location: 136130 - 137593 (-)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_5690_108
Type:
Location: 137747 - 138202 (-)
Type:
Location: 137747 - 138202 (-)
Gene ID: CokerMO_2019_SRR8692236_bin.2_k141_5690_109
Type: CAZyme
Location: 138206 - 141214 (-)
Type: CAZyme
Location: 138206 - 141214 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.