Cluster: CokerMO_2019_SRR8692215_bin.33_CGC52
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: CokerMO_2019_SRR8692215_bin.33
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | CokerMO_2019_SRR8692215_bin.33_k141_41114 | CokerMO_2019_SRR8692215_bin.33_k141_41114_174 | 199084 | 199728 | + | 3.A.1.19.5 |
| NULL(UNKNOWN) | CokerMO_2019_SRR8692215_bin.33_k141_41114 | CokerMO_2019_SRR8692215_bin.33_k141_41114_175 | 199763 | 200971 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | CokerMO_2019_SRR8692215_bin.33_k141_41114 | CokerMO_2019_SRR8692215_bin.33_k141_41114_176 | 200968 | 205062 | - | HTH_AraC |
| TC | CokerMO_2019_SRR8692215_bin.33_k141_41114 | CokerMO_2019_SRR8692215_bin.33_k141_41114_177 | 205990 | 207486 | + | 2.A.2.3.4 |
| CAZyme | CokerMO_2019_SRR8692215_bin.33_k141_41114 | CokerMO_2019_SRR8692215_bin.33_k141_41114_178 | 207528 | 208505 | + | GH43_1 |
| CAZyme | CokerMO_2019_SRR8692215_bin.33_k141_41114 | CokerMO_2019_SRR8692215_bin.33_k141_41114_179 | 208502 | 210523 | + | GH67 |
| pfam | CokerMO_2019_SRR8692215_bin.33_k141_41114 | CokerMO_2019_SRR8692215_bin.33_k141_41114_180 | 210538 | 211719 | + | UxuA |
| pfam | CokerMO_2019_SRR8692215_bin.33_k141_41114 | CokerMO_2019_SRR8692215_bin.33_k141_41114_181 | 211779 | 212594 | + | adh_short | Epimerase | 3HCDH_N | KR | adh_short_C2 |
| TC | CokerMO_2019_SRR8692215_bin.33_k141_41114 | CokerMO_2019_SRR8692215_bin.33_k141_41114_182 | 212737 | 215136 | + | 3.A.10.3.4 |
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_41114_174
Type: TC
Location: 199084 - 199728 (+)
Type: TC
Location: 199084 - 199728 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_41114_175
Type:
Location: 199763 - 200971 (+)
Type:
Location: 199763 - 200971 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_41114_176
Type: TF
Location: 200968 - 205062 (-)
Type: TF
Location: 200968 - 205062 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_41114_177
Type: TC
Location: 205990 - 207486 (+)
Type: TC
Location: 205990 - 207486 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_41114_178
Type: CAZyme
Location: 207528 - 208505 (+)
Type: CAZyme
Location: 207528 - 208505 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_41114_179
Type: CAZyme
Location: 208502 - 210523 (+)
Type: CAZyme
Location: 208502 - 210523 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_41114_180
Type: pfam
Location: 210538 - 211719 (+)
Type: pfam
Location: 210538 - 211719 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_41114_181
Type: pfam
Location: 211779 - 212594 (+)
Type: pfam
Location: 211779 - 212594 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_41114_182
Type: TC
Location: 212737 - 215136 (+)
Type: TC
Location: 212737 - 215136 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900766195
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| CokerMO_2019_SRR8692215_bin.33_k141_41114_181 | vegan > omnivore | 1.30148 | 0.00863 |
| CokerMO_2019_SRR8692215_bin.33_k141_41114_181 | vegetarian > omnivore | 1.37524 | 0.04136 |