Cluster: CokerMO_2019_SRR8692180_bin.26_CGC7
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: CokerMO_2019_SRR8692180_bin.26
- CGC Family ID: CGCFAM_09247
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | CokerMO_2019_SRR8692180_bin.26_k141_6798 | CokerMO_2019_SRR8692180_bin.26_k141_6798_3 | 1548 | 2945 | - | 2.A.3.7.7 |
| pfam | CokerMO_2019_SRR8692180_bin.26_k141_6798 | CokerMO_2019_SRR8692180_bin.26_k141_6798_4 | 3273 | 4355 | - | OTCace | OTCace_N |
| TF | CokerMO_2019_SRR8692180_bin.26_k141_6798 | CokerMO_2019_SRR8692180_bin.26_k141_6798_5 | 4920 | 5885 | + | GerE |
| TC | CokerMO_2019_SRR8692180_bin.26_k141_6798 | CokerMO_2019_SRR8692180_bin.26_k141_6798_6 | 6628 | 8811 | - | 3.A.1.134.12 |
| TC | CokerMO_2019_SRR8692180_bin.26_k141_6798 | CokerMO_2019_SRR8692180_bin.26_k141_6798_7 | 8801 | 9646 | - | 3.A.1.134.12 |
| STP | CokerMO_2019_SRR8692180_bin.26_k141_6798 | CokerMO_2019_SRR8692180_bin.26_k141_6798_8 | 9947 | 11023 | + | NUDIX |
| NULL(UNKNOWN) | CokerMO_2019_SRR8692180_bin.26_k141_6798 | CokerMO_2019_SRR8692180_bin.26_k141_6798_9 | 11032 | 11286 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | CokerMO_2019_SRR8692180_bin.26_k141_6798 | CokerMO_2019_SRR8692180_bin.26_k141_6798_10 | 11380 | 13086 | - | 2.A.33.1.2 |
| TC | CokerMO_2019_SRR8692180_bin.26_k141_6798 | CokerMO_2019_SRR8692180_bin.26_k141_6798_11 | 13385 | 13729 | - | 4.A.3.2.8 |
| TC | CokerMO_2019_SRR8692180_bin.26_k141_6798 | CokerMO_2019_SRR8692180_bin.26_k141_6798_12 | 13739 | 14044 | - | 4.A.3.2.8 |
| TC | CokerMO_2019_SRR8692180_bin.26_k141_6798 | CokerMO_2019_SRR8692180_bin.26_k141_6798_13 | 14165 | 15535 | - | 4.A.3.2.4 |
| CAZyme | CokerMO_2019_SRR8692180_bin.26_k141_6798 | CokerMO_2019_SRR8692180_bin.26_k141_6798_14 | 15626 | 17053 | - | GH1 |
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_6798_3
Type: TC
Location: 1548 - 2945 (-)
Type: TC
Location: 1548 - 2945 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_6798_4
Type: pfam
Location: 3273 - 4355 (-)
Type: pfam
Location: 3273 - 4355 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_6798_5
Type: TF
Location: 4920 - 5885 (+)
Type: TF
Location: 4920 - 5885 (+)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_6798_6
Type: TC
Location: 6628 - 8811 (-)
Type: TC
Location: 6628 - 8811 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_6798_7
Type: TC
Location: 8801 - 9646 (-)
Type: TC
Location: 8801 - 9646 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_6798_8
Type: STP
Location: 9947 - 11023 (+)
Type: STP
Location: 9947 - 11023 (+)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_6798_9
Type:
Location: 11032 - 11286 (+)
Type:
Location: 11032 - 11286 (+)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_6798_10
Type: TC
Location: 11380 - 13086 (-)
Type: TC
Location: 11380 - 13086 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_6798_11
Type: TC
Location: 13385 - 13729 (-)
Type: TC
Location: 13385 - 13729 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_6798_12
Type: TC
Location: 13739 - 14044 (-)
Type: TC
Location: 13739 - 14044 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_6798_13
Type: TC
Location: 14165 - 15535 (-)
Type: TC
Location: 14165 - 15535 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_6798_14
Type: CAZyme
Location: 15626 - 17053 (-)
Type: CAZyme
Location: 15626 - 17053 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| CokerMO_2019_SRR8692180_bin.26_k141_6798_3 | vegan > omnivore | 2.03688 | 0.00286 |