Cluster: CokerMO_2019_SRR8692180_bin.26_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: CokerMO_2019_SRR8692180_bin.26
- CGC Family ID: CGCFAM_09246
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | CokerMO_2019_SRR8692180_bin.26_k141_6474 | CokerMO_2019_SRR8692180_bin.26_k141_6474_10 | 13027 | 14214 | - | 3.A.11.1.4 |
| NULL(UNKNOWN) | CokerMO_2019_SRR8692180_bin.26_k141_6474 | CokerMO_2019_SRR8692180_bin.26_k141_6474_11 | 14211 | 14495 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | CokerMO_2019_SRR8692180_bin.26_k141_6474 | CokerMO_2019_SRR8692180_bin.26_k141_6474_12 | 14722 | 15081 | - | 9.B.55.2.2 |
| NULL(UNKNOWN) | CokerMO_2019_SRR8692180_bin.26_k141_6474 | CokerMO_2019_SRR8692180_bin.26_k141_6474_13 | 15523 | 15870 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | CokerMO_2019_SRR8692180_bin.26_k141_6474 | CokerMO_2019_SRR8692180_bin.26_k141_6474_14 | 16058 | 20866 | + | GH20 |
| CAZyme | CokerMO_2019_SRR8692180_bin.26_k141_6474 | CokerMO_2019_SRR8692180_bin.26_k141_6474_15 | 21133 | 25551 | + | GH84 |
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_6474_10
Type: TC
Location: 13027 - 14214 (-)
Type: TC
Location: 13027 - 14214 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_6474_11
Type:
Location: 14211 - 14495 (-)
Type:
Location: 14211 - 14495 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_6474_12
Type: TC
Location: 14722 - 15081 (-)
Type: TC
Location: 14722 - 15081 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_6474_13
Type:
Location: 15523 - 15870 (-)
Type:
Location: 15523 - 15870 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_6474_14
Type: CAZyme
Location: 16058 - 20866 (+)
Type: CAZyme
Location: 16058 - 20866 (+)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_6474_15
Type: CAZyme
Location: 21133 - 25551 (+)
Type: CAZyme
Location: 21133 - 25551 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.