Cluster: CokerMO_2019_SRR8692180_bin.26_CGC31
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate: host glycan
- Genome ID: CokerMO_2019_SRR8692180_bin.26
- CGC Family ID: CGCFAM_00243
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | CokerMO_2019_SRR8692180_bin.26_k141_54240 | CokerMO_2019_SRR8692180_bin.26_k141_54240_2 | 839 | 1999 | - | CE9 |
| STP | CokerMO_2019_SRR8692180_bin.26_k141_54240 | CokerMO_2019_SRR8692180_bin.26_k141_54240_3 | 2163 | 3332 | - | SIS | SIS |
| TF | CokerMO_2019_SRR8692180_bin.26_k141_54240 | CokerMO_2019_SRR8692180_bin.26_k141_54240_4 | 3547 | 4278 | - | GntR |
| TC | CokerMO_2019_SRR8692180_bin.26_k141_54240 | CokerMO_2019_SRR8692180_bin.26_k141_54240_5 | 4407 | 4835 | - | 4.A.6.1.8 |
| NULL(UNKNOWN) | CokerMO_2019_SRR8692180_bin.26_k141_54240 | CokerMO_2019_SRR8692180_bin.26_k141_54240_6 | 5189 | 5809 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | CokerMO_2019_SRR8692180_bin.26_k141_54240 | CokerMO_2019_SRR8692180_bin.26_k141_54240_7 | 6128 | 6967 | - | 4.A.6.1.18 |
| TC | CokerMO_2019_SRR8692180_bin.26_k141_54240 | CokerMO_2019_SRR8692180_bin.26_k141_54240_8 | 6957 | 7841 | - | 4.A.6.1.18 |
| TC | CokerMO_2019_SRR8692180_bin.26_k141_54240 | CokerMO_2019_SRR8692180_bin.26_k141_54240_9 | 7940 | 8404 | - | 4.A.6.1.18 |
| CAZyme | CokerMO_2019_SRR8692180_bin.26_k141_54240 | CokerMO_2019_SRR8692180_bin.26_k141_54240_10 | 8406 | 10202 | - | GH35 |
| CAZyme | CokerMO_2019_SRR8692180_bin.26_k141_54240 | CokerMO_2019_SRR8692180_bin.26_k141_54240_11 | 10800 | 15680 | - | CBM32 | CBM32 | CBM32 | GH20 |
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_54240_2
Type: CAZyme
Location: 839 - 1999 (-)
Type: CAZyme
Location: 839 - 1999 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_54240_3
Type: STP
Location: 2163 - 3332 (-)
Type: STP
Location: 2163 - 3332 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_54240_4
Type: TF
Location: 3547 - 4278 (-)
Type: TF
Location: 3547 - 4278 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_54240_5
Type: TC
Location: 4407 - 4835 (-)
Type: TC
Location: 4407 - 4835 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_54240_6
Type:
Location: 5189 - 5809 (-)
Type:
Location: 5189 - 5809 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_54240_7
Type: TC
Location: 6128 - 6967 (-)
Type: TC
Location: 6128 - 6967 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_54240_8
Type: TC
Location: 6957 - 7841 (-)
Type: TC
Location: 6957 - 7841 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_54240_9
Type: TC
Location: 7940 - 8404 (-)
Type: TC
Location: 7940 - 8404 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_54240_10
Type: CAZyme
Location: 8406 - 10202 (-)
Type: CAZyme
Location: 8406 - 10202 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_54240_11
Type: CAZyme
Location: 10800 - 15680 (-)
Type: CAZyme
Location: 10800 - 15680 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| CokerMO_2019_SRR8692180_bin.26_k141_54240_7 | vegetarian > vegan | 1.06419 | 0.00566 |