Cluster: CokerMO_2019_SRR8692180_bin.26_CGC17
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: CokerMO_2019_SRR8692180_bin.26
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | CokerMO_2019_SRR8692180_bin.26_k141_25474 | CokerMO_2019_SRR8692180_bin.26_k141_25474_14 | 20773 | 21348 | - | 2.A.107.1.2 |
| pfam | CokerMO_2019_SRR8692180_bin.26_k141_25474 | CokerMO_2019_SRR8692180_bin.26_k141_25474_15 | 21576 | 22775 | - | Cys_Met_Meta_PP |
| CAZyme | CokerMO_2019_SRR8692180_bin.26_k141_25474 | CokerMO_2019_SRR8692180_bin.26_k141_25474_16 | 22925 | 24682 | - | GH32 |
| TC | CokerMO_2019_SRR8692180_bin.26_k141_25474 | CokerMO_2019_SRR8692180_bin.26_k141_25474_17 | 24679 | 26100 | - | 4.A.1.2.1 |
| TF | CokerMO_2019_SRR8692180_bin.26_k141_25474 | CokerMO_2019_SRR8692180_bin.26_k141_25474_18 | 26322 | 27293 | - | LacI |
| TC | CokerMO_2019_SRR8692180_bin.26_k141_25474 | CokerMO_2019_SRR8692180_bin.26_k141_25474_19 | 27627 | 29279 | - | 9.B.34.1.3 |
| STP | CokerMO_2019_SRR8692180_bin.26_k141_25474 | CokerMO_2019_SRR8692180_bin.26_k141_25474_20 | 29505 | 31739 | - | EAL | GGDEF |
| pfam | CokerMO_2019_SRR8692180_bin.26_k141_25474 | CokerMO_2019_SRR8692180_bin.26_k141_25474_21 | 32699 | 34153 | - | PelG |
| CAZyme | CokerMO_2019_SRR8692180_bin.26_k141_25474 | CokerMO_2019_SRR8692180_bin.26_k141_25474_22 | 34154 | 35590 | - | GT4 |
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_25474_14
Type: TC
Location: 20773 - 21348 (-)
Type: TC
Location: 20773 - 21348 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_25474_15
Type: pfam
Location: 21576 - 22775 (-)
Type: pfam
Location: 21576 - 22775 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_25474_16
Type: CAZyme
Location: 22925 - 24682 (-)
Type: CAZyme
Location: 22925 - 24682 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_25474_17
Type: TC
Location: 24679 - 26100 (-)
Type: TC
Location: 24679 - 26100 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_25474_18
Type: TF
Location: 26322 - 27293 (-)
Type: TF
Location: 26322 - 27293 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_25474_19
Type: TC
Location: 27627 - 29279 (-)
Type: TC
Location: 27627 - 29279 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_25474_20
Type: STP
Location: 29505 - 31739 (-)
Type: STP
Location: 29505 - 31739 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_25474_21
Type: pfam
Location: 32699 - 34153 (-)
Type: pfam
Location: 32699 - 34153 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_25474_22
Type: CAZyme
Location: 34154 - 35590 (-)
Type: CAZyme
Location: 34154 - 35590 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| CokerMO_2019_SRR8692180_bin.26_k141_25474_17 | vegan > omnivore | 1.04347 | 0.00286 |