Cluster: CokerMO_2019_SRR8692180_bin.26_CGC15
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 6
- Substrate:
- Genome ID: CokerMO_2019_SRR8692180_bin.26
- CGC Family ID: CGCFAM_05174
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | CokerMO_2019_SRR8692180_bin.26_k141_23557 | CokerMO_2019_SRR8692180_bin.26_k141_23557_3 | 3352 | 4581 | + | GT2 |
| pfam | CokerMO_2019_SRR8692180_bin.26_k141_23557 | CokerMO_2019_SRR8692180_bin.26_k141_23557_4 | 4568 | 7405 | + | YfhO | YfhO | YfhO |
| CAZyme | CokerMO_2019_SRR8692180_bin.26_k141_23557 | CokerMO_2019_SRR8692180_bin.26_k141_23557_5 | 7538 | 8644 | - | GT2 |
| CAZyme | CokerMO_2019_SRR8692180_bin.26_k141_23557 | CokerMO_2019_SRR8692180_bin.26_k141_23557_6 | 8976 | 10514 | + | GH25 |
| CAZyme | CokerMO_2019_SRR8692180_bin.26_k141_23557 | CokerMO_2019_SRR8692180_bin.26_k141_23557_7 | 10634 | 11668 | - | GT2 |
| CAZyme | CokerMO_2019_SRR8692180_bin.26_k141_23557 | CokerMO_2019_SRR8692180_bin.26_k141_23557_8 | 11689 | 12771 | - | GT2 |
| pfam | CokerMO_2019_SRR8692180_bin.26_k141_23557 | CokerMO_2019_SRR8692180_bin.26_k141_23557_9 | 12813 | 14225 | - | PS_pyruv_trans |
| TC | CokerMO_2019_SRR8692180_bin.26_k141_23557 | CokerMO_2019_SRR8692180_bin.26_k141_23557_10 | 14371 | 15195 | + | 3.A.1.103.4 |
| TC | CokerMO_2019_SRR8692180_bin.26_k141_23557 | CokerMO_2019_SRR8692180_bin.26_k141_23557_11 | 15205 | 16560 | + | 3.A.1.103.1 |
| pfam | CokerMO_2019_SRR8692180_bin.26_k141_23557 | CokerMO_2019_SRR8692180_bin.26_k141_23557_12 | 17106 | 18173 | - | Acyl_transf_3 |
| CAZyme | CokerMO_2019_SRR8692180_bin.26_k141_23557 | CokerMO_2019_SRR8692180_bin.26_k141_23557_13 | 18297 | 19238 | + | GT81 |
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_23557_3
Type: CAZyme
Location: 3352 - 4581 (+)
Type: CAZyme
Location: 3352 - 4581 (+)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_23557_4
Type: pfam
Location: 4568 - 7405 (+)
Type: pfam
Location: 4568 - 7405 (+)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_23557_5
Type: CAZyme
Location: 7538 - 8644 (-)
Type: CAZyme
Location: 7538 - 8644 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_23557_6
Type: CAZyme
Location: 8976 - 10514 (+)
Type: CAZyme
Location: 8976 - 10514 (+)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_23557_7
Type: CAZyme
Location: 10634 - 11668 (-)
Type: CAZyme
Location: 10634 - 11668 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_23557_8
Type: CAZyme
Location: 11689 - 12771 (-)
Type: CAZyme
Location: 11689 - 12771 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_23557_9
Type: pfam
Location: 12813 - 14225 (-)
Type: pfam
Location: 12813 - 14225 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_23557_10
Type: TC
Location: 14371 - 15195 (+)
Type: TC
Location: 14371 - 15195 (+)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_23557_11
Type: TC
Location: 15205 - 16560 (+)
Type: TC
Location: 15205 - 16560 (+)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_23557_12
Type: pfam
Location: 17106 - 18173 (-)
Type: pfam
Location: 17106 - 18173 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_23557_13
Type: CAZyme
Location: 18297 - 19238 (+)
Type: CAZyme
Location: 18297 - 19238 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.