Cluster: CokerMO_2019_SRR8692180_bin.26_CGC14
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: CokerMO_2019_SRR8692180_bin.26
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | CokerMO_2019_SRR8692180_bin.26_k141_22266 | CokerMO_2019_SRR8692180_bin.26_k141_22266_21 | 23533 | 24978 | - | GH140 |
| TC | CokerMO_2019_SRR8692180_bin.26_k141_22266 | CokerMO_2019_SRR8692180_bin.26_k141_22266_22 | 25442 | 26869 | - | 4.A.1.2.2 |
| peptidase | CokerMO_2019_SRR8692180_bin.26_k141_22266 | CokerMO_2019_SRR8692180_bin.26_k141_22266_23 | 27287 | 28615 | + | S09.UPD |
| pfam | CokerMO_2019_SRR8692180_bin.26_k141_22266 | CokerMO_2019_SRR8692180_bin.26_k141_22266_24 | 29130 | 29552 | - | DUF3284 |
| CAZyme | CokerMO_2019_SRR8692180_bin.26_k141_22266 | CokerMO_2019_SRR8692180_bin.26_k141_22266_25 | 29600 | 31081 | - | GH1 |
| TC | CokerMO_2019_SRR8692180_bin.26_k141_22266 | CokerMO_2019_SRR8692180_bin.26_k141_22266_26 | 31210 | 32514 | - | 4.A.3.2.2 |
| TC | CokerMO_2019_SRR8692180_bin.26_k141_22266 | CokerMO_2019_SRR8692180_bin.26_k141_22266_27 | 32596 | 32892 | - | 4.A.3.2.2 |
| TC | CokerMO_2019_SRR8692180_bin.26_k141_22266 | CokerMO_2019_SRR8692180_bin.26_k141_22266_28 | 33037 | 33366 | - | 4.A.3.1.1 |
| TF | CokerMO_2019_SRR8692180_bin.26_k141_22266 | CokerMO_2019_SRR8692180_bin.26_k141_22266_29 | 33419 | 35149 | - | Mga |
| CAZyme | CokerMO_2019_SRR8692180_bin.26_k141_22266 | CokerMO_2019_SRR8692180_bin.26_k141_22266_30 | 36272 | 37699 | - | GH1 |
| sulfatase | CokerMO_2019_SRR8692180_bin.26_k141_22266 | CokerMO_2019_SRR8692180_bin.26_k141_22266_31 | 38520 | 39446 | - | S1_7 |
| pfam | CokerMO_2019_SRR8692180_bin.26_k141_22266 | CokerMO_2019_SRR8692180_bin.26_k141_22266_32 | 39457 | 41025 | - | Apiosidase | DUF5060 | DUF5605 |
| TC | CokerMO_2019_SRR8692180_bin.26_k141_22266 | CokerMO_2019_SRR8692180_bin.26_k141_22266_33 | 41036 | 42319 | - | 2.A.1.2.93 |
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_22266_21
Type: CAZyme
Location: 23533 - 24978 (-)
Type: CAZyme
Location: 23533 - 24978 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_22266_22
Type: TC
Location: 25442 - 26869 (-)
Type: TC
Location: 25442 - 26869 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_22266_23
Type: peptidase
Location: 27287 - 28615 (+)
Type: peptidase
Location: 27287 - 28615 (+)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_22266_24
Type: pfam
Location: 29130 - 29552 (-)
Type: pfam
Location: 29130 - 29552 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_22266_25
Type: CAZyme
Location: 29600 - 31081 (-)
Type: CAZyme
Location: 29600 - 31081 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_22266_26
Type: TC
Location: 31210 - 32514 (-)
Type: TC
Location: 31210 - 32514 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_22266_27
Type: TC
Location: 32596 - 32892 (-)
Type: TC
Location: 32596 - 32892 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_22266_28
Type: TC
Location: 33037 - 33366 (-)
Type: TC
Location: 33037 - 33366 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_22266_29
Type: TF
Location: 33419 - 35149 (-)
Type: TF
Location: 33419 - 35149 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_22266_30
Type: CAZyme
Location: 36272 - 37699 (-)
Type: CAZyme
Location: 36272 - 37699 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_22266_31
Type: sulfatase
Location: 38520 - 39446 (-)
Type: sulfatase
Location: 38520 - 39446 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_22266_32
Type: pfam
Location: 39457 - 41025 (-)
Type: pfam
Location: 39457 - 41025 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_22266_33
Type: TC
Location: 41036 - 42319 (-)
Type: TC
Location: 41036 - 42319 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.