Cluster: CokerMO_2019_SRR8692180_bin.26_CGC12
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: CokerMO_2019_SRR8692180_bin.26
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | CokerMO_2019_SRR8692180_bin.26_k141_19492 | CokerMO_2019_SRR8692180_bin.26_k141_19492_3 | 2759 | 8059 | + | CBM32 | GH2 |
| pfam | CokerMO_2019_SRR8692180_bin.26_k141_19492 | CokerMO_2019_SRR8692180_bin.26_k141_19492_4 | 8559 | 10187 | - | UPF0020 | Cons_hypoth95 | MTS | tRNA_U5-meth_tr | Methyltransf_31 |
| TC | CokerMO_2019_SRR8692180_bin.26_k141_19492 | CokerMO_2019_SRR8692180_bin.26_k141_19492_5 | 10398 | 11399 | + | 3.A.1.3.10 |
| TC | CokerMO_2019_SRR8692180_bin.26_k141_19492 | CokerMO_2019_SRR8692180_bin.26_k141_19492_6 | 11613 | 12266 | + | 3.A.1.3.14 |
| TC | CokerMO_2019_SRR8692180_bin.26_k141_19492 | CokerMO_2019_SRR8692180_bin.26_k141_19492_7 | 12468 | 13229 | + | 3.A.1.3.10 |
| pfam | CokerMO_2019_SRR8692180_bin.26_k141_19492 | CokerMO_2019_SRR8692180_bin.26_k141_19492_8 | 13226 | 14335 | - | ABC2_membrane_2 | ABC2_membrane_3 |
| TC | CokerMO_2019_SRR8692180_bin.26_k141_19492 | CokerMO_2019_SRR8692180_bin.26_k141_19492_9 | 14332 | 15048 | - | 3.A.1.115.1 |
| TC | CokerMO_2019_SRR8692180_bin.26_k141_19492 | CokerMO_2019_SRR8692180_bin.26_k141_19492_10 | 15060 | 15740 | - | 3.A.1.132.1 |
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_19492_3
Type: CAZyme
Location: 2759 - 8059 (+)
Type: CAZyme
Location: 2759 - 8059 (+)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_19492_4
Type: pfam
Location: 8559 - 10187 (-)
Type: pfam
Location: 8559 - 10187 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_19492_5
Type: TC
Location: 10398 - 11399 (+)
Type: TC
Location: 10398 - 11399 (+)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_19492_6
Type: TC
Location: 11613 - 12266 (+)
Type: TC
Location: 11613 - 12266 (+)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_19492_7
Type: TC
Location: 12468 - 13229 (+)
Type: TC
Location: 12468 - 13229 (+)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_19492_8
Type: pfam
Location: 13226 - 14335 (-)
Type: pfam
Location: 13226 - 14335 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_19492_9
Type: TC
Location: 14332 - 15048 (-)
Type: TC
Location: 14332 - 15048 (-)
Gene ID: CokerMO_2019_SRR8692180_bin.26_k141_19492_10
Type: TC
Location: 15060 - 15740 (-)
Type: TC
Location: 15060 - 15740 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.