Cluster: ChuDM_2017_SRR8942418_bin.17_CGC5
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942418_bin.17
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ChuDM_2017_SRR8942418_bin.17_k119_21999 | ChuDM_2017_SRR8942418_bin.17_k119_21999_113 | 122886 | 123968 | - | GT28 |
| TC | ChuDM_2017_SRR8942418_bin.17_k119_21999 | ChuDM_2017_SRR8942418_bin.17_k119_21999_114 | 123968 | 125179 | - | 2.A.103.1.1 |
| pfam | ChuDM_2017_SRR8942418_bin.17_k119_21999 | ChuDM_2017_SRR8942418_bin.17_k119_21999_115 | 125176 | 126633 | - | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | ChuDM_2017_SRR8942418_bin.17_k119_21999 | ChuDM_2017_SRR8942418_bin.17_k119_21999_116 | 126647 | 127801 | - | 9.B.146.1.6 |
Gene ID: ChuDM_2017_SRR8942418_bin.17_k119_21999_113
Type: CAZyme
Location: 122886 - 123968 (-)
Type: CAZyme
Location: 122886 - 123968 (-)
Gene ID: ChuDM_2017_SRR8942418_bin.17_k119_21999_114
Type: TC
Location: 123968 - 125179 (-)
Type: TC
Location: 123968 - 125179 (-)
Gene ID: ChuDM_2017_SRR8942418_bin.17_k119_21999_115
Type: pfam
Location: 125176 - 126633 (-)
Type: pfam
Location: 125176 - 126633 (-)
Gene ID: ChuDM_2017_SRR8942418_bin.17_k119_21999_116
Type: TC
Location: 126647 - 127801 (-)
Type: TC
Location: 126647 - 127801 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Aphodousia
Species
Aphodousia faecalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.