Cluster: ChuDM_2017_SRR8942399_bin.18_CGC12
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942399_bin.18
- CGC Family ID: CGCFAM_00019
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942399_bin.18_k119_5857 | ChuDM_2017_SRR8942399_bin.18_k119_5857_86 | 110712 | 112088 | - | 3.A.1.17.10 |
| NULL(UNKNOWN) | ChuDM_2017_SRR8942399_bin.18_k119_5857 | ChuDM_2017_SRR8942399_bin.18_k119_5857_87 | 112092 | 113147 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_5857 | ChuDM_2017_SRR8942399_bin.18_k119_5857_88 | 113150 | 114961 | - | 3.D.1.5.1 |
| STP | ChuDM_2017_SRR8942399_bin.18_k119_5857 | ChuDM_2017_SRR8942399_bin.18_k119_5857_89 | 114955 | 116787 | - | Pyr_redox_2 |
| CAZyme | ChuDM_2017_SRR8942399_bin.18_k119_5857 | ChuDM_2017_SRR8942399_bin.18_k119_5857_90 | 117044 | 118426 | - | GH4 |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_5857 | ChuDM_2017_SRR8942399_bin.18_k119_5857_91 | 118430 | 120046 | - | 4.A.1.1.3 |
| pfam | ChuDM_2017_SRR8942399_bin.18_k119_5857 | ChuDM_2017_SRR8942399_bin.18_k119_5857_92 | 120146 | 121012 | - | PRD | PRD | CAT_RBD |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_5857 | ChuDM_2017_SRR8942399_bin.18_k119_5857_93 | 121019 | 121531 | - | 4.A.1.2.5 |
| STP | ChuDM_2017_SRR8942399_bin.18_k119_5857 | ChuDM_2017_SRR8942399_bin.18_k119_5857_94 | 121853 | 122095 | - | Fer4 | Fer4 |
| NULL(UNKNOWN) | ChuDM_2017_SRR8942399_bin.18_k119_5857 | ChuDM_2017_SRR8942399_bin.18_k119_5857_95 | 122255 | 122443 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_5857 | ChuDM_2017_SRR8942399_bin.18_k119_5857_96 | 123271 | 125541 | - | 1.I.1.1.3 |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_5857 | ChuDM_2017_SRR8942399_bin.18_k119_5857_97 | 126022 | 128355 | + | 3.A.3.5.15 |
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_5857_86
Type: TC
Location: 110712 - 112088 (-)
Type: TC
Location: 110712 - 112088 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_5857_87
Type:
Location: 112092 - 113147 (-)
Type:
Location: 112092 - 113147 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_5857_88
Type: TC
Location: 113150 - 114961 (-)
Type: TC
Location: 113150 - 114961 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_5857_89
Type: STP
Location: 114955 - 116787 (-)
Type: STP
Location: 114955 - 116787 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_5857_90
Type: CAZyme
Location: 117044 - 118426 (-)
Type: CAZyme
Location: 117044 - 118426 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_5857_91
Type: TC
Location: 118430 - 120046 (-)
Type: TC
Location: 118430 - 120046 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_5857_92
Type: pfam
Location: 120146 - 121012 (-)
Type: pfam
Location: 120146 - 121012 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_5857_93
Type: TC
Location: 121019 - 121531 (-)
Type: TC
Location: 121019 - 121531 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_5857_94
Type: STP
Location: 121853 - 122095 (-)
Type: STP
Location: 121853 - 122095 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_5857_95
Type:
Location: 122255 - 122443 (+)
Type:
Location: 122255 - 122443 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_5857_96
Type: TC
Location: 123271 - 125541 (-)
Type: TC
Location: 123271 - 125541 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_5857_97
Type: TC
Location: 126022 - 128355 (+)
Type: TC
Location: 126022 - 128355 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900762405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ChuDM_2017_SRR8942399_bin.18_k119_5857_87 | vegan > omnivore | 1.03088 | 0.00933 |