Cluster: ChuDM_2017_SRR8942361_bin.4_CGC9
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942361_bin.4
- CGC Family ID: CGCFAM_05343
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942361_bin.4_k119_4053 | ChuDM_2017_SRR8942361_bin.4_k119_4053_72 | 84247 | 85830 | + | 3.A.1.3.20 |
| TC | ChuDM_2017_SRR8942361_bin.4_k119_4053 | ChuDM_2017_SRR8942361_bin.4_k119_4053_73 | 85834 | 86595 | + | 3.A.1.3.20 |
| NULL(UNKNOWN) | ChuDM_2017_SRR8942361_bin.4_k119_4053 | ChuDM_2017_SRR8942361_bin.4_k119_4053_74 | 86640 | 87104 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | ChuDM_2017_SRR8942361_bin.4_k119_4053 | ChuDM_2017_SRR8942361_bin.4_k119_4053_75 | 87251 | 90058 | - | EAL | GGDEF | GGDEF |
| CAZyme | ChuDM_2017_SRR8942361_bin.4_k119_4053 | ChuDM_2017_SRR8942361_bin.4_k119_4053_76 | 90441 | 91520 | - | CBM50 |
| pfam | ChuDM_2017_SRR8942361_bin.4_k119_4053 | ChuDM_2017_SRR8942361_bin.4_k119_4053_77 | 91749 | 92660 | - | HNH | HNH_4 |
| NULL(UNKNOWN) | ChuDM_2017_SRR8942361_bin.4_k119_4053 | ChuDM_2017_SRR8942361_bin.4_k119_4053_78 | 92800 | 92934 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ChuDM_2017_SRR8942361_bin.4_k119_4053 | ChuDM_2017_SRR8942361_bin.4_k119_4053_79 | 93527 | 94672 | + | 2.A.45.2.6 |
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_4053_72
Type: TC
Location: 84247 - 85830 (+)
Type: TC
Location: 84247 - 85830 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_4053_73
Type: TC
Location: 85834 - 86595 (+)
Type: TC
Location: 85834 - 86595 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_4053_74
Type:
Location: 86640 - 87104 (-)
Type:
Location: 86640 - 87104 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_4053_75
Type: STP
Location: 87251 - 90058 (-)
Type: STP
Location: 87251 - 90058 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_4053_76
Type: CAZyme
Location: 90441 - 91520 (-)
Type: CAZyme
Location: 90441 - 91520 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_4053_77
Type: pfam
Location: 91749 - 92660 (-)
Type: pfam
Location: 91749 - 92660 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_4053_78
Type:
Location: 92800 - 92934 (-)
Type:
Location: 92800 - 92934 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_4053_79
Type: TC
Location: 93527 - 94672 (+)
Type: TC
Location: 93527 - 94672 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus delbrueckii_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.