Cluster: ChuDM_2017_SRR8942361_bin.4_CGC6
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942361_bin.4
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942361_bin.4_k119_3732 | ChuDM_2017_SRR8942361_bin.4_k119_3732_3 | 2140 | 3759 | - | 3.A.1.5.19 |
| TF | ChuDM_2017_SRR8942361_bin.4_k119_3732 | ChuDM_2017_SRR8942361_bin.4_k119_3732_4 | 4136 | 4504 | + | GntR |
| TC | ChuDM_2017_SRR8942361_bin.4_k119_3732 | ChuDM_2017_SRR8942361_bin.4_k119_3732_5 | 4506 | 5204 | + | 3.A.1.132.6 |
| NULL(UNKNOWN) | ChuDM_2017_SRR8942361_bin.4_k119_3732 | ChuDM_2017_SRR8942361_bin.4_k119_3732_6 | 5204 | 6040 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ChuDM_2017_SRR8942361_bin.4_k119_3732 | ChuDM_2017_SRR8942361_bin.4_k119_3732_7 | 6185 | 7687 | + | tRNA-synt_1c | Anticodon_2 |
| TC | ChuDM_2017_SRR8942361_bin.4_k119_3732 | ChuDM_2017_SRR8942361_bin.4_k119_3732_8 | 7770 | 8795 | - | 2.A.98.1.4 |
| TF | ChuDM_2017_SRR8942361_bin.4_k119_3732 | ChuDM_2017_SRR8942361_bin.4_k119_3732_9 | 8914 | 9789 | + | HTH_1 |
| peptidase | ChuDM_2017_SRR8942361_bin.4_k119_3732 | ChuDM_2017_SRR8942361_bin.4_k119_3732_10 | 9835 | 11262 | - | M20.UPA |
| TC | ChuDM_2017_SRR8942361_bin.4_k119_3732 | ChuDM_2017_SRR8942361_bin.4_k119_3732_11 | 11284 | 12903 | - | 3.A.1.5.25 |
| TF | ChuDM_2017_SRR8942361_bin.4_k119_3732 | ChuDM_2017_SRR8942361_bin.4_k119_3732_12 | 13499 | 14245 | - | HTH_6 |
| TC | ChuDM_2017_SRR8942361_bin.4_k119_3732 | ChuDM_2017_SRR8942361_bin.4_k119_3732_13 | 14417 | 16279 | + | 4.A.1.2.11 |
| CAZyme | ChuDM_2017_SRR8942361_bin.4_k119_3732 | ChuDM_2017_SRR8942361_bin.4_k119_3732_14 | 16299 | 17762 | + | GH1 |
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_3732_3
Type: TC
Location: 2140 - 3759 (-)
Type: TC
Location: 2140 - 3759 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_3732_4
Type: TF
Location: 4136 - 4504 (+)
Type: TF
Location: 4136 - 4504 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_3732_5
Type: TC
Location: 4506 - 5204 (+)
Type: TC
Location: 4506 - 5204 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_3732_6
Type:
Location: 5204 - 6040 (+)
Type:
Location: 5204 - 6040 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_3732_7
Type: pfam
Location: 6185 - 7687 (+)
Type: pfam
Location: 6185 - 7687 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_3732_8
Type: TC
Location: 7770 - 8795 (-)
Type: TC
Location: 7770 - 8795 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_3732_9
Type: TF
Location: 8914 - 9789 (+)
Type: TF
Location: 8914 - 9789 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_3732_10
Type: peptidase
Location: 9835 - 11262 (-)
Type: peptidase
Location: 9835 - 11262 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_3732_11
Type: TC
Location: 11284 - 12903 (-)
Type: TC
Location: 11284 - 12903 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_3732_12
Type: TF
Location: 13499 - 14245 (-)
Type: TF
Location: 13499 - 14245 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_3732_13
Type: TC
Location: 14417 - 16279 (+)
Type: TC
Location: 14417 - 16279 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_3732_14
Type: CAZyme
Location: 16299 - 17762 (+)
Type: CAZyme
Location: 16299 - 17762 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus delbrueckii_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.